EBench? is used in teaching NCBI's PowerScripting workshop and is not supported as an application program.

EBench

E-Utility to call [http://eutils.ncbi.nlm.nih.gov/entrez/eutils/*.fcgi?]
Esearch	Epost	Esummary	Efetch	Elink	Einfo	Egquery	Espell

Query [term] (use "+"'s instead of spaces)




UIDs [id] (integers; non-digit separators allowed)



Database [db]

   pubmed [PubMed bibliographic records]
   protein [Protein sequence records]
   nucleotide [Nucleotide sequence record]
   gene [Gene records]
   homologene [Gene homologs]
   structure [Three-dimensional molecular models]
   genome: Genomic sequences, contigs, maps
   genomeprj [Genome Project summaries]
   books [Online Books]
   cancerchromosomes [SKYCGH]
   cdd [Conserved Domains]
   domains [3D Structure Domains]
   gap [Genotype/Phenotype Associations]
   gds [GEO DataSets]
   geo [Gene expression/array data]
   gensat [Mouse gene expression atlas]
   journals [Journals]
   mesh [Medical Subject Headings]
   ncbisearch [NCBI web pages]
   nlmcatalog [NLM Catalog]
   omia [Mendelian inheritance in animals]
   omim [Mendelian inheritance in man]
   pcassay [PubChem BioAssay]
   pccompound [PubChem Compound]
   pcsubstance [PubChem Substance ]
   pmc [PubMed Central]
   taxonomy [NCBI Taxonomy]
   toolkit [NCBI Toolkit]
   popset [Population sequence sets]
   probe [Probe data]
   unigene [Transcript Clusters]
   unists [Unique Sequence Tagged Sites]
   snp [Single Nucleotide Polymorphisms]



Database From [dbfrom]

   none

   pubmed
   protein
   nucleotide
   gene
   homologene
   structure
   genome
   books
   cancerchromosome
   cdd
   domains
   gap
   gds
   geo
   journals
   mesh
   ncbisearch
   omia
   omim
   pmc
   taxonomy
   toolkit
   popset
   probe
   unigene
   unists
   snp


 E-Link UIDs one-to-one
 Use History [use_history]
Query Key  (In term, use %23 for #) [query_key]
Web Environment [WebEnv]

First Record to retrieve [retstart]: Maximum # of records [retmax] default [20] 20 50 100 200 500 1000 Output Format [retmode] default XML TEXT HTML ASN.1 Output Type [rettype] Gen: default Gen: count Gen: brief Gen: summary Gen: uilist Gen: native Lit: abstract Lit: medline [PubMed only] Lit: citation [PubMed only] Lit: full [Journals & OMIM only] Gene: gene_table [Tabular output for Gene] Seq: gb [GenBank format; sequence not shown for CON records] Seq: gbwithparts [GenBank format; sequence always shown] Seq: fasta [FASTA format] Seq: gp [GenPept format] Seq: gpc [Nucleotide INSDSeq structured flat file] Seq: gbc [Protein INSDSeq structured flat file] Seq: est [EST Report] Seq: gss [GSS Report] Seq: seqid [Name, accession.ver] Seq: acc [gi to accession] SNP: flt [SNP Flat File report] SNP: chr [SNP Chromosome Report] SNP: rsr [SNP RS Cluster report] SNP: docset [SNP RS summary]

Post URL Build URL http://eutils.ncbi.nlm.nih.gov/entrez/eutils/.fcgi?&retmax=20

Complexity [complexity]:

   get the whole blob [0]
   get the bioseq for gi of interest [1]
   get the minimal bioseq-set [2]
   get the minimal nuc=prot set [3]

   get the minimal pub-set [4]


Strand [strand]

Minus [1]
Plus [2]



Subsequence Specification
Start [seq_start]
Stop [seq_stop]