Research Articles and Reports from NIJ-Funded Research
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| Title | Category | Authors | Publication | Year | Awardee | Award Number | |
|---|---|---|---|---|---|---|---|
| dcDegenerate Oligonucleotide Primed-PCR for Multilocus, Genome-wide Analysis From Limited Quantities of DNA |
Limited Quantity DNA | Michelle D. Bonnette, MS, Victoria R. Pavlova, MS, Denise N. Rodier, MS, Lindsay P. Thompson, MS, Edward L. Boone, PhD, Kelly L. Brown, MS, Kristin M. Meyer, MS, Michelle B. Trevino, BS, Jarrod R. Champagne, MS, and Tracey Dawson Cruz, PhD |
Diagn Mol Pathol Volume 18, Number 3, September 2009 | 2009 | Virginia Commonwealth University |
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| Developing a simple method to process bone samples prior to DNA isolation | Optimization of DNA evidence collection techniques | Li R, Chapman S, Thompson M, Schwartz M | Leg Med (Tokyo). 2009 Mar;11(2):76-9. | 2009 | Indiana University Purdue University Indianapolis | 2006-DN-BX-K010 | |
| The Correlation Between Skeletal Weathering and DNA Quality and Quantity | Compromised DNA Evidence | Lisa M. Misner,1, M.S.; Andrea C. Halvorson,1, M.S.; Jennifer L. Dreier,2,§ M.S.F.S.; Douglas H. Ubelaker,3 Ph.D.; and David R. Foran,4 Ph.D. | J Forensic Sci. 2009 Jul;54(4):822-8 | 2009 | Michigan State University | 2002-IJ-CX-K016 | |
| A Low Cost Microfluidic Microarray System for Typing Y Chromosome SNPs (pdf, 45 pages) | Miniaturization and Automation | Jennifer E. Reynolds, Ph.D., Phil Belgrader Ph.D., Rebecca Holmberg Ph.D., Cynthia, Zimmerman, Clare Stewart, Rebecca Mokhiber, and Christopher Cooney, Ph.D. | Final Grant Report | 2009 | Akonni Biosystems, Inc. | 2007-DN-BX-K145 | |
| Laser Microdissection as a Technique to Resolve Mixtures and Improve the Analysis of Difficult Evidence Samples (pdf, 96 pages) | General Tools and Information | Robert Driscoll, MFS ; Dane Plaza, BS ; Robert Bever, Ph.D. | Final Grant Report | 2009 | The Bode Technology Group, Inc. | 2006-DN-BX-K032 | |
| Repair of Damaged DNA for Forensic Analysis (pdf, 96 pages) | Compromised DNA evidence | John Nelson, Ph.D. | Final Grant Report | 2009 | General Electric Company | 2006-DN-BX-K018 | |
| A Hand-Held DNA-Based Forensic Tool (pdf, 55 pages) | Miniaturization and Automation | Carl A. Batt, Scott J. Stelick, Matthew J. Kennedy, Clarissa S. Lui, Adam J. Lowe | Final Grant Report | 2009 | Cornell University | 2004-DN-BX-K001 | |
| Separation of Sperm and Epithelial Cells in a Microfluidic Device: An Automated Method for High Efficiency, High Purity Separations (pdf, 71 pages) | Miniaturization and Automation | James P. Landers, Ph.D. | Final Grant Report | 2009 | University of Virginia | 2006-DN-BX-K021 | |
| Development and Evaluation of a Whole Genome Amplification Method for Accurate Multiplex STR Genotyping of Compromised Forensic Casework Samples (pdf, 84 pages) | Compromised DNA Evidence | Dawson Cruz, Tracey | Final Grant Report | 2009 | Virginia Commonwealth University | 2005-DA-BX-K002 | |
| Application of Proteinases for DNA Isolation of Bone Specimens (pdf, 35 pages) | General Tools and Information | Richard C. Li, Ph.D. | Final Grant Report | 2009 | Indiana University | 2006-DN-BX-K010 | |
| A real-time multiplex SNP melting assay to discriminate individuals. | General Tools and Information | Nicklas JA, Buel E. | J Forensic Sci. 2008 Nov;53(6):1316-24. | 2009 | Vermont Department of Public Safety | 2005-DA-BX-K003 | |
| Building a Genetic Reference Database for Dog mtDNA Sequences and SNPs (pdf, 69 pages) | Non-human DNA | Marc W. Allard | Final Grant Report | 2009 | George Washington University | 2004-DN-BX-K004 | |
| Identification of forensically informative SNPs in the domestic dog mitochondrial control region. | Non-human DNA | Webb KM, Allard MW. | J Forensic Sci. 2009 Mar;54(2):289-304. | 2009 | George Washington University | 2004-DN-BX-K004 | |
| Mitochondrial genome DNA analysis of the domestic dog: identifying informative SNPs outside of the control region. | Non-human DNA | Webb KM, Allard MW. | J Forensic Sci. 2009 Mar;54(2):275-88. | 2009 | George Washington University | 2004-DN-BX-K004 | |
| Development and Validation of a Standardized Canine STR Panel for Use in Forensic Casework (pdf, 63 pages) | Non-Human DNA | Sree Kanthaswamy | Final Grant Report | 2009 | University of California, Davis | 2004-DN-BX-K007 | |
| Production and certification of NIST Standard Reference Material 2372 Human DNA Quantitation Standard. | Human DNA Quantitation | Kline MC, Duewer DL, Travis JC, Smith MV, Redman JW, Vallone PM, Decker AE, Butler JM. | Anal Bioanal Chem. 2009 Apr 18. [Epub ahead of print] | 2009 | NIST | 2003-IJ-R-029 | |
| Integrated sample cleanup-capillary electrophoresis microchip for high-performance short tandem repeat genetic analysis. | Miniaturization and Automation | Yeung SH, Liu P, Del Bueno N, Greenspoon SA, Mathies RA. | Anal Chem. 2009 Jan 1;81(1):210-7. | 2009 | University of California, Berkeley | 2007-DN-BX-K142 | |
| Microfluidic DNA Extraction and Purification from Forensic Samples (pdf, 88 pages) | Miniaturization and Automation | Eugene Tan, Heidi Giese, and Daniel M. Hartmann | Final Grant Report | 2009 | Network Biosystems, Inc. | 2007-DN-BX-K184 | |
| Mitochondrial DNA Analysis by Denaturing Liquid Chromatography for the Separation of Mixtures in Forensic Samples (pdf, 107 pages) | Mitochondrial DNA | Phillip B. Danielson | Final Grant Report | 2009 | University of Denver | 2003-IJ-CX-K104 | |
| Forensic Stain Identification By RT-PCR Analysis (pdf, 130 pages) | General Tools and Information | Tricia Conti and Eric Buel | Final Grant Report | 2009 | Vermont Department of Public Safety | 2004-DN-BX-K002 | |
| Determination of the Age (Time since Deposition) of a Biological Stain (pdf, 85 pages) | General Tools and Information | Jack Ballantyne | Final Grant Report | 2009 | University of Central Florida | 2005-MU-BX-K071 | |
| Demonstration of rapid multiplex PCR amplification involving 16 genetic loci. | General Tools and Information | Vallone PM, Hill CR, Butler JM. | Forensic Sci Int Genet. 2008 Dec;3(1):42-5. | 2008 | NIST | 2003-IJ-R-029 | |
| Rapid Determination of Monozygous Twinning with a Microfabricated Capillary Array Electrophoresis Genetic-Analysis Device | Miniaturization and Automation | Stephanie H. I. Yeung, Igor L. Medintz, Susan A. Greenspoon, and Richard A. Mathies | Clin Chem. 2008 Jun;54(6):1080-4. | 2008 | University of California, Berkeley | 2004-DN-BX-K216 | |
| Fluorescence energy transfer-labeled primers for high-performance forensic DNA profiling | Miniaturization and Automation | Stephanie H. I. Yeung, Tae Seok Seo, Cecelia A. Crouse, Susan A. Greenspoon, Thomas N. Chiesl, Jeff D. Ban, Richard A. Mathies | Electrophoresis. 2008 Jun;29(11):2251-9. | 2008 | University of California, Berkeley | 2004-DN-BX-K216 | |
| Forensic typing of autosomal SNPs with a 29 SNP-multiplex — Results of a collaborative EDNAP exercise | Alternative Genetic Markers | J.J. Sanchez, C. Børsting, K. Balogh, B. Berger, M. Bogus, J.M. Butler, A. Carracedo, D. Syndercombe Court, L.A. Dixon, B. Filipovi?, M. Fondevila, P. Gill, C.D. Harrison, C. Hohoff, R. Huel, B. Ludes, W. Parson, T.J. Parsons, E. Petkovski, C. Phillips, H. Schmitter, P.M. Schneider, P.M. Vallone, N. Morling | Forensic Science International: Genetics June 2008 (Vol. 2, Issue 3, Pages 176-183) |
2008 | NIST | 2003-IJ-R-029 | |
| Characterization of 26 miniSTR loci for improved analysis of degraded DNA samples | Compromised DNA Evidence | Hill CR, Kline MC, Coble MD, Butler JM | J Forensic Sci. 2008 Jan; 53(1):73-80. Epub 2007 Nov 13 | 2008 | NIST | 2003-IJ-R-029 | |
| Evaluation and quantification of nuclear DNA from human telogen hairs. | Compromised DNA Evidence | Opel KL, Fleishaker EL, Nicklas JA, Buel E, McCord BR. | J Forensic Sci. 2008 Jul;53(4):853-7 | 2008 | Ohio University | 2002-IJ-CX-K007 | |
| Demonstration of rapid multiplex PCR amplification involving 16 genetic loci | General Tools and Information | Peter M. Vallone, Carolyn R. Hilla and John M. Butler | Forensic Science International: Genetics Volume 3, Issue 1, December 2008, Pages 42-45 |
2008 | NIST | 2003-IJ-R-029 | |
| A quadruplex real-time qPCR assay for the simultaneous assessment of total human DNA, human male DNA, DNA degradation and the presence of PCR inhibitors in forensic samples: A diagnostic tool for STR typing | Human DNA Quantitation | William R. Hudlow, Mavis Date Chong, Katie L. Swango, Mark D. Timken, Martin R. Buoncristiani |
Forensic Science International: Genetics 2 (2008) 108–125 | 2008 | California Department of Justice | 2002-IJ-CX-K008 | |
| A forensic laboratory tests the Berkeley microfabricated capillary array electrophoresis device | Miniaturization and Automation | Greenspoon SA, Yeung SH, Johnson KR, Chu WK, Rhee HN, McGuckian AB, Crouse CA, Chiesl TN, Barron AE, Scherer JR, Ban JD, Mathies RA. | J Forensic Sci. 2008 Jul;53(4):828-37 | 2008 | University of California, Berkeley | 2004-DN-BX-K216 | |
| Real-time forensic DNA analysis at a crime scene using a portable microchip analyzer | Miniaturization and Automation | Peng Liu, Stephanie H.I. Yeung, Karin A. Crenshaw, Cecelia A. Crouse, James R. Scherer, Richard A. Mathies | Forensic Science International: Genetics September 2008 (Vol. 2, Issue 4, Pages 301-309) |
2008 | University of California, Berkeley | 2004-DN-BX-K216 | |
| Identification of West Eurasian mitochondrial haplogroups by mtDNA SNP screening: Results of the 2006–2007 EDNAP collaborative exercise | Mitochondrial DNA | Walther Parson, Liane Fendt, David Ballard, Claus Børsting, Bernd Brinkmann, Ángel Carracedo, Mónica Carvalho, Michael D. Coble, Francisco Corte Real, Stijn Desmyter, Berit M. Dupuy, Cheryl Harrison, Carsten Hohoff, Rebecca Just, Tanja Krämer, Niels Morling, Antonio Salas, Hermann Schmitter, Peter M. Schneider, Marie-Luise Sonntag, Peter M. Vallone, Anita Brandstätter | Forensic Science International: Genetics January 2008 (Vol. 2, Issue 1, Pages 61-68) |
2008 | Armed Forces DNA Identification Laboratory | 2005-DN-R-086 | |
| Forensic utility of the mitochondrial hypervariable region 1 of domestic dogs, in conjunction with breed and geographic information | Non-human DNA | Himmelberger AL, Spear TF, Satkoski JA, George DA, Garnica WT, Malladi VS, Smith DG, Webb KM, Allard MW, Kanthaswamy S | J Forensic Sci. 2008 Jan;53(1):81-9 | 2008 | University of California, Davis | 2004-DN-BX-K007 | |
| Generalized Additive Models and Lucilia sericata Growth: Assessing Confidence Intervals and Error Rates in Forensic Entomology | Non-human DNA | Tarone AM, Foran DR | J Forensic Sci. 2008 Jul; 53(4):942-8 | 2008 | Michigan State University | 2004-DN-BX-K005 | |
| A rare Y chromosome missense mutation in exon 25 of human USP9Y revealed by pyrosequencing | Y chromosome | Sims LM, Ballantyne J | Biochem Genet. 2008 Apr; 46(3-4):154-61. Epub 2008 Jan 20 | 2008 | University of Central Florida | 1998-IJCX-K003 | |
| Analysis of mutations in father-son pairs with 17 Y-STR loci | Y chromosome | Decker, A.E., Kline, M.C., Redman, J.W., Reid, T.M., Butler, J.M. | FSI Genetics (2008) 2(3):e31-e35. | 2008 | NIST | 2003-IJ-R-029 | |
| Y-STR profiling in extended interval (> or = 3 days) postcoital cervicovaginal samples | Y chromosome | Mayntz-Press KA, Sims LM, Hall A, Ballantyne J | J Forensic Sci. 2008 Mar;53(2):342-8 | 2008 | University of Central Florida | 1998-IJCX-K003 | |
| The golden gene (SLC24A5) differentiates US sub-populations within the ethnically admixed Y-SNP haplogroups | Y chromosome | Sims LM, Ballantyne J | Leg Med (Tokyo). 2008 Mar; 10(2):72-7. Epub 2007 Aug 27 | 2008 | University of Central Florida | 1998-IJCX-K003 | |
| Candidate SNPs for a universal individual identification panel | Alternative Genetic Markers | Pakstis AJ, Speed WC, Kidd JR, Kidd KK | Hum Genet. 2007 May; 121(3-4):305-17. Epub 2007 Feb 27 | 2007 | Yale University | 2004-DN-BX-K025 | |
| Concordance study between the AmpFlSTR MiniFiler PCR amplification kit and conventional STR typing kits. | Compromised DNA Evidence | Hill CR, Kline MC, Mulero JJ, Lagacé RE, Chang CW, Hennessy LK, Butler JM. | J Forensic Sci. 2007 Jul; 52(4):870-3. Epub 2007 Jun 6. | 2007 | NIST | 2003-IJ-R-029 | |
| Developmental validation of reduced-size STR Miniplex primer sets. | Compromised DNA Evidence | Opel KL, Chung DT, Drábek J, Butler JM, McCord BR. | J Forensic Sci. 2007 Nov; 52(6):1263-71. | 2007 | Florida International University | 2005-MU-BX-K073 | |
| Allele frequencies of six miniSTR loci of three ethnic populations in Singapore. | Compromised DNA Evidence | Yong RY, Gan LS, Coble MD, Yap EP. | Forensic Sci Int. 2007 Mar 2; 166(2-3):240-3. Epub 2006 Jan 23. | 2007 | NIST | 2003-IJ-R-029 | |
| Short tandem repeat typing technologies used in human identity testing. | General Tools and Information | Butler, J.M. | Biotechniques. 2007 Oct; 43(4):ii-v | 2007 | NIST | 2003-IJ-R-029 | |
| Forensic science. | General Tools and Information | Brettell TA, Butler JM, Almirall JR. | Anal Chem. 2007 Jun 15; 79(12):4365-84. Epub 2007 May 17. | 2007 | NIST | 2003-IJ-R-029 | |
| Validation of reduced-scale reactions for the Quantifiler Human DNA kit | General Tools and Information | Westring CG, Kristinsson R, Gilbert DM, Danielson PB. | J Forensic Sci. 2007 Sep; 52(5):1035-43. Epub 2007 Aug 6. | 2007 | University of Denver | 2003-IJ-CX-K104 | |
| Development of Microdevice Solid-Phase Purification Utilizing Dual Pressure/Electro-Elution for Concentration and Enhanced Recovery of DNA (pdf, 24 pages) | Miniaturization and Automation | Joan Bienvenue | Final Grant Report | 2007 | University of Virginia | 2005-DA-BX-K100 | |
| Forensic application of the Affymetrix human mitochondrial resequencing array | Miniaturization and Automation | Vallone, P.M., Jakupciak, J.P., Coble, M.D. | Forensic Science International: Genetics June 2007 (Vol. 1, Issue 2, Pages 196-198) |
2007 | NIST | 2003-IJ-R-029 | |
| Integrated portable polymerase chain reaction-capillary electrophoresis microsystem for rapid forensic short tandem repeat typing. | Miniaturization and Automation | Liu P, Seo TS, Beyor N, Shin KJ, Scherer JR, Mathies RA. | Anal Chem. 2007 Mar 1; 79(5):1881-9. Epub 2007 Feb 2. | 2007 | University of California, Berkeley | 2004-DN-BX-K216 | |
| Development and expansion of high-quality control region databases to improve forensic mtDNA evidence interpretation | Mitochondrial DNA | Jodi A. Irwin, Jessica L. Saunier, Katharine M. Strouss, Kimberly A. Sturk, Toni M. Diegoli, Rebecca S. Just, Michael D. Coble, Walther Parson, Thomas J. Parsons | Forensic Science International: Genetics June 2007 (Vol. 1, Issue 2, Pages 154-157) |
2007 | Armed Forces DNA Identification Laboratory | 2005-DN-R-086 | |
| Resolving mtDNA mixtures by denaturing high-performance liquid chromatography and linkage phase determination | Mitochondrial DNA | Phillip B. Danielson, Hong-Yu Sun, Terry Melton, Richard Kristinsson | Forensic Science International: Genetics June 2007 (Vol. 1, Issue 2, Pages 148-153) |
2007 | University of Denver | 2003-IJ-CX-K104 | |
| Mitochondrial DNA amplification success rate as a function of hair morphology. | Mitochondrial DNA | Roberts KA, Calloway C. J | Forensic Sci. 2007 Jan; 52(1):40-7. | 2007 | Children's Hospital, Oakland Research Institute | 1996-IJ-CX-0028 | |
| Validation of a short tandem repeat multiplex typing system for genetic individualization of domestic cat samples. | Non-human DNA | Coomber N, David VA, O'Brien SJ, Menotti-Raymond M. | Croat Med J. 2007 Aug; 48(4):547-55. | 2007 | National Cancer Institute | 1999-IJ-CX-A079 | |
| Real-time polymerase chain reaction quantification of canine DNA. | Non-Human DNA | Evans JJ, Wictum EJ, Penedo MC, Kanthaswamy S. | J Forensic Sci. 2007 Jan; 52(1):93-6. | 2007 | University of California | 2004-DN-BX-K007 | |
| Laser Microdissection Separation of Pure Spermatozoa Populations from Mixed Cell Samples for Forensic DNA Analysis (pdf, 100 pages) | Sperm Detection and Separation | Christine T. Sanders; Emily K. Reisenbigler; Daniel A. Peterson | Final Grant Report | 2007 | Rosalind Franklin University of Medicine and Science | 2004-DN-BX-K215 | |
| Population data for a novel, highly discriminating tetra-local Y-chromosome short tandem repeat: DYS503. | Y chromosome | Hanson EK, Ballantyne J. | J Forensic Sci. 2007 Mar; 52(2):498-9. | 2007 | University of Central Florida | 1998-IJCX-K003 | |
| Sub-populations within the major European and African derived haplogroups R1b3 and E3a are differentiated by previously phylogenetically undefined Y-SNPs. | Y chromosome | Sims LM, Garvey D, Ballantyne J. | Hum Mutat. 2007 Jan; 28(1):97. | 2007 | University of Central Florida | 1998-IJCX-K003 | |
| The impact of additional Y-STR loci on resolving common haplotypes and closely related individuals | Y chromosome | A.E. Decker, M.C. Kline, P.M. Vallone, J.M. Butler | Forensic Science International: Genetics June 2007 (Vol. 1, Issue 2, Pages 215-217) | 2007 | NIST | 2003-IJ-R-029 | |
| An ultra-high discrimination y chromosome short tandem repeat multiplex DNA typing system. | Y chromosome | Hanson EK, Ballantyne J. | PLoS ONE. 2007 Aug 1; 2(1):e688. | 2007 | University of Central Florida | 1998-IJCX-K003 | |
| The impact of additional Y-STR loci on resolving common haplotypes and closely related individuals | Y chromosome | A.E. Decker, M.C. Kline, P.M. Vallone, J.M. Butler | Forensic Science International: Genetics June 2007 (Vol. 1, Issue 2, Pages 215-217) | 2007 | NIST | 2003-IJ-R-029 | |
| Performance characteristics of commercial Y-STR multiplex systems. | Y chromosome | Mayntz-Press KA, Ballantyne J. | J Forensic Sci. 2007 Sep; 52(5):1025-34. Epub 2007 Aug 6. | 2007 | University of Central Florida | 1998-IJCX-K003 | |
| Population data for 48 'Non-Core' Y chromosome STR loci. | Y chromosome | Hanson EK, Ballantyne J. | Leg Med (Tokyo). 2007 Jul; 9(4):221-31. Epub 2007 Feb 22. | 2007 | University of Central Florida | 1998-IJCX-K003 | |
| Developing a SNP panel for forensic identification of individuals | Alternative Genetic Markers | Kidd KK, Pakstis AJ, Speed WC, Grigorenko EL, Kajuna SL, Karoma NJ, Kungulilo, Kim JJ, Lu RB, Odunsi A, Okonofua F, Parnas J, Schulz LO, Zhukova OV, Kidd JR. | Forensic Sci Int. 2006 Dec 1; 164(1):20-32. Epub 2005 Dec 19 | 2006 | Yale University | 2004-DN-BX-K025 | |
| The identification of newborns using messenger RNA profiling analysis. | Alternative Genetic Markers | Alvarez M, Ballantyne J. | Anal Biochem. 2006 Oct 1; 357(1):21-34. | 2006 | University of Central Florida | 2005-MU-BX-K075 | |
| The application of miniplex primer sets in the analysis of degraded DNA from human skeletal remains. | Compromised DNA Evidence | Opel KL, Chung DT, Drabek J, Tatarek NE, Jantz LM, McCord BR. | J Forensic Sci. 2006 Mar; 51(2):351-6 | 2006 | Ohio University | 2002-IJ-CX-K007 | |
| Novel thermostable Y-family polymerases: applications for the PCR amplification of damaged or ancient DNAs | Compromised DNA Evidence | McDonald JP, Hall A, Gasparutto D, Cadet J, Ballantyne J, Woodgate R. | Nucleic Acids Res. 2006 Feb 18; 34(4):1102-11 | 2006 | National Center for Forensic Sciences | 2002-IJ-CX-K001 | |
| Assessment and In Vitro Repair of Damaged DNA Templates (pdf, 94 pages) | Compromised DNA Evidence | Jack Ballantyne | Final Grant Report | 2006 | University of Central Florida | 2002-IJ-CX-K001 | |
| Increasing the Predictability and Success Rate of Skeletal Evidence Typing: Using Physical Characteristics of Bone as a Metric for DNA Quality and Quantity (pdf, 105 pages) | Compromised DNA Evidence | Dr. David Foran | Final Grant Report | 2006 | Michigan State University | 2002-IJ-CX-K016 | |
| Multiplex_QA: an exploratory quality assessment tool for multiplexed electrophoretic assays. | General Tools and Information | Dueler DL, Butler JM. | Electrophoresis. 2006 Oct; 27(19):3735-46. | 2006 | National Institute of Standards and Technology | 2003-IJ-R-029 | |
| Genetics and genomics of core short tandem repeat loci used in human identity testing. | General Tools and Information | Butler JM. | J Forensic Sci 2006 Mar; 51(2):253-65 | 2006 | National Institute of Standards and Technology | 2003-IJ-R-025 | |
| Developmental validation of a multiplex qPCR assay for assessing the quantity and quality of nuclear DNA in forensic samples. | Human DNA Quantitation | Swango KL, Hudlow WR, Timken MD, Buoncristiani MR. | Forensic Sci Int. 2006 Oct 27; [Epub ahead of print] | 2006 | California Department of Justice | 2002-IJ-CX-K008 | |
| Simultaneous determination of total human and male DNA using a duplex real-time PCR assay. | Human DNA Quantitation | Nicklas JA and Buel E. | Journal of Forensic Sciences 2006 September; 51(5): 1005-1015. | 2006 | Vermont Department of Public Safety | 2000-IJ-CX-K012 | |
| Simple, Rapid and Accurate Quantitation of Human DNA (pdf, 101 pages) | Human DNA Quantitation | Eric Buel, Ph.D. | Final Grant Report | 2006 | Vermont Department of Public Safety | 2000-IJ-CX-K012 | |
| A Chip-Based Genetic Detector for Rapid Identification of Individuals (pdf, 102 pages) | Miniaturization and Automation | Ron Sosnowski | Final Grant Report | 2006 | Nanogen, Inc. | 1997-LB-VX-0004 | |
| Rapid and high-throughput forensic short tandem repeat typing using a 96-lane microfabricated capillary array electrophoresis microdevice. | Miniaturization and Automation | Yeung SH, Greenspoon SA, McGuckian A, Crouse CA, Emrich CA, Ban J, Mathies RA. | J Forensic Sci. 2006 Jul; 51(4):740-7. | 2006 | University of California | 2004-DN-BX-K216 | |
| Surface modification of poly(methyl methacrylate) for improved adsorption of wall coating polymers for microchip electrophoresis. | Miniaturization and Automation | Shah JJ, Geist J, Locascio LE, Gaitan M, Rao MV, Vreeland WN. | Electrophoresis. 2006 Oct; 27(19):3788-96. | 2006 | NIST | 2003-IJ-R-029 | |
| Cellular immobilization within microfluidic microenvironments: dielectrophoresis with polyelectrolyte multilayers. | Miniaturization and Automation | Forry SP, Reyes DR, Gaitan M, Locascio LE. | J Am Chem Soc. 2006 Oct 25; 128(42):13678-9. | 2006 | NIST | 2003-IJ-R-029 | |
| Microdevice DNA forensics by the simple tandem repeat method. | Miniaturization and Automation | Goedecke N, McKenna B, El-Difrawy S, Gismondi E, Swenson A, Carey L, Matsudaira P, Ehrlich DJ. | J Chromatogr A. 2006 Apr 14; 1111(2):206-13. | 2006 | Whitehead Institute for Biomedical Research | 1998-LB-VX-K022 | |
| Effective strategies for forensic analysis in the mitochondrial DNA coding region. | Mitochondrial DNA | Coble MD, Vallone PM, Just RS, Diegoli TM, Smith BC, Parsons TJ. | Int J Legal Med. 2006 Jan; 120(1):27-32. | 2006 | American Registry of Pathology | 2000-IJ-CX-K010 | |
| Mitochondrial DNA Genome Sequencing and SNP Assay Development for Increased Power of Discrimination (pdf, 119 pages) | Mitochondrial DNA | Thomas J. Parsons | Final Grant Report | 2006 | American Registry of Pathology | 2000-IJ-CX-K010 | |
| Characterization of mtDNA SNP typing and mixture ratio assessment with simultaneous real-time PCR quantification of both allelic states | Mitochondrial DNA | Harald Niederstätter, Michael D. Coble, Petra Grubwieser, Thomas J. Parsons and Walther Parson | Int J Legal Med. 2006 Jan; 120(1):18-23. | 2006 | American Registry of Pathology | 2000-IJ-CX-K010 | |
| Components of developmental plasticity in a Michigan population of Lucilia sericata (Diptera: Calliphoridae). | Non-Human DNA | Tarone AM, Foran DR. | J Med Entomol. 2006 Sep; 43(5):1023-33. | 2006 | Michigan State University | 2004-DN-BX-K005 | |
| Laser microdissection separation of pure spermatozoa from epithelial cells for short tandem repeat analysis | Sperm Detection and Separation | Sanders CT, Sanches N, Ballantyne J, Peterson DA | J Forensic Sci. 2006 Jul; 51(4):748-57 | 2006 | Rosalind Franklin University of Medicine and Science | 2004-DN-BX-K215 | |
| Development of a High-Throughput Method to Isolate Sperm DNA in Sexual Assault Cases (pdf, 31 pages) | Sperm Detection and Separation | Carll Ladd; Eric Carita; Elaine Pagliaro; Alex Garvin; Andrew Crumbie; Henry Lee | Final Grant Report | 2006 | Connecticut Department of Public Safety | 2003-IJ-CX-K103 | |
| Testing and evaluation of 43 "noncore" Y chromosome markers for forensic casework applications. | Y Chromosome | Hanson EK, Berdos PN, Ballantyne J. | J Forensic Sci. 2006 Nov; 51(6):1298-314. | 2006 | University of Central Florida | 1998-IJ-CX-K003 | |
| Y-STR concordance study between Y-Plex5, Y-Plex6, Y-Plex12, PowerplexY, Y-Filer, MPI, and MPII. | Y Chromosome | Gross AM, Berdos P, Ballantyne J | J Forensic Sci. 2006 Nov; 51(6):1423-8. | 2006 | University of Central Florida | 1998-IJ-CX-K003 | |
| Comprehensive annotated STR physical map of the human Y chromosome: Forensic implications | Y Chromosome | Hanson EK, Ballantyne J | Legal Medicine. 2006 Mar; 8(2):110-20 | 2006 | University of Central Florida | 1998-IJ-CX-K003 | |
| Genetic structure among 38 populations from the United States based on 11 U.S. core Y chromosome STRs. | Y Chromosome | Redd AJ, Chamberlain VF, Kearney VF, Stover D, Karafet T, Calderon K, Walsh B, Hammer MF. | J Forensic Sci. 2006 May; 51(3):580-5. | 2006 | Arizona Board of Regents, University of Arizona | 2000-IJ-CX-K006 | |
| Forensic Applications of Y Chromosome STRs and SNPs (pdf, 51 pages) | Y Chromosome | Michael Hammer and Alan J. Redd | Final Grant Report | 2006 | Arizona Board of Regents, University of Arizona | 2000-IJ-CX-K006 | |
| Allele frequencies for 27 Y-STR loci with U.S. Caucasian, African American, and Hispanic samples. | Y Chromosome | Butler JM, Decker AE, Vallone PM, Kline MC. | Forensic Sci Int. 2006 Jan 27; 156(2-3):250-60. | 2006 | National Institute of Standards and Technology | 2003-IJ-R-029 | |
| Allele frequencies for 70 autosomal SNP loci with U.S. Caucasian, African-American, and Hispanic samples. | Alternative Genetic Markers | Vallone PM, Decker AE, Butler JM. | Forensic Sci Int. 2005 May 10; 149(2-3):279-86 | 2005 | National Institute of Standards and Technology | 2003-IJ-R-029 | |
| Characterization of new miniSTR loci to aid analysis of degraded DNA. | Compromised DNA Evidence | Coble MD, Butler JM. | J Forensic Sci. 2005 Jan; 50(1):43-53 | 2005 | National Institute of Standards and Technology | 2003-IJ-R-029 | |
| A quantitative PCR assay for the assessment of DNA degradation in forensic samples. | Compromised DNA Evidence | Swango KL, Timken MD, Chong MD, Buoncristiani MR. | Forensic Sci Int. 2006 Apr 20; 158(1):14-26. Epub 2005 Jun 3 | 2005 | California Department of Justice | 2002-IJ-CX-K008 | |
| The Development of Miniplex Primer Sets for the Analysis of Degraded DNA (pdf, 86 pages) | Compromised DNA Evidence | Bruce McCord | Final Grant Report | 2005 | Ohio University | 2002-IJ-CX-K007 | |
| Analysis of artificially degraded DNA using STRs and SNPs-results of a collaborative European (EDNAP) exercise. | Compromised DNA Evidence | Dixon LA, Dobbins AE, Pulker HK, Butler JM, Vallone PM, Coble MD, Parson W, Berger B, Grubwieser P, Mogensen HS, Morling N, Nielsen K, Sanchez JJ, Petkovski E, Carracedo A, Sanchez-Diz P, Ramos-Luis E, Brion M, Irwin JA, Just RS, Loreille O, Parsons TJ, Syndercombe Court D, Schmitter H, Stradmann -Bellinghausen B, Bender K, Gill P. | Forensic Sci Int. 2005 Dec 9; [Epub ahead of print] | 2005 | National Institute of Standards and Technology | 2003-IJ-R-029 | |
| A duplex real-time qPCR assay for the quantification of human nuclear and mitochondrial DNA in forensic samples: Implications for quantifying DNA in degraded samples. | Human DNA Quantitation | Timken MD, Swango KL, Orrego C, Buoncristiani MR | J Forensic Sci. 2005 Sep; 50(5):1044-1060. | 2005 | California Department of Justice | 2002-IJ-CX-K008 | |
| An Alu-based, MCG Eclipsetm Real-time PCR method for quantitation of human DNA in forensic samples | Human DNA Quantitation | Nicklas JA, Buel E | Journal of Forensic Science. 2005 Sep; 50(5):1081-1090 | 2005 | Vermont Department of Public Safety | 2000-IJ-CX-K012 | |
| Quantitation of DNA for Forensic DNA Typing by qPCR (pdf, 90 pages) | Human DNA Quantitation | Mark D. Timken, Katie L. Swango, Cristián Orrego, Mavis Date Chong, Martin R. Buoncristiani | Final Grant Report | 2005 | California Department of Justice | 2002-IJ-CX-K008 | |
| Results from the NIST 2004 DNA Quantitation Study. | Human DNA Quantitation | Kline MC, Duewer DL, Redman JW, Butler JM. | J Forensic Sci. 2005 May; 50(3):570-8. | 2005 | National Institute of Standards and Technology | 2003-IJ-R-029 | |
| Forensic casework analysis using the HVI/ HVII mtDNA linear array assay | Mitochondrial DNA | Divne A., Nilsson M., Calloway C., Reynolds R., Erlich H., Allen M. | J Forensic Sci. 2005 May; 50(3):548-554 | 2005 | Children's Hospital, Oakland Research Institute | 1996-IJ-CX-0028 | |
| Mitochondrial DNA typing screens with control region and coding region SNPs. | Mitochondrial DNA | Kline, M.C., Vallone, P.M., Redman, J.W., Duewer, D.L., Calloway, C.D., Butler, J.M. | J Forensic Sci. 2005 Mar; 50(2):377-85 | 2005 | National Institute of Standards and Technology | 2003-IJ-R-029 | |
| Separating human DNA mixtures using denaturing high-performance liquid chromatography. | Mitochondrial DNA | Danielson PB, Kristinsson R, Shelton RJ, Laberge GS | Expert Rev Mol Diagn. 2005 Jan; 5(1):53-63 | 2005 | University of Denver-Colorado Seminary | 2003-IJ-CX-K104 | |
| Optimization of a duplex amplification and sequencing strategy for the HVI/HVII regions of human mitochondrial DNA for forensic casework | Mitochondrial DNA | Chong MD, Calloway CD, Klein SB, Orrego C, Buoncristiani MR. | Forensic Sci Int. 2005 Nov 25; 154(2-3):137-48. | 2005 | Children's Hospital, Oakland Research Institute | 1996-IJ-CX-0028 | |
| Development of a Rapid, Immobilized Probe Assay for the Detection of Mitochondrial DNA Variation in the HVI and HVII Regions (pdf, 50 pages) | Mitochondrial DNA | Cassandra D. Calloway, MS and Henry Erlich, PhD | Final Grant Report | 2005 | Children's Hospital, Oakland Research Institute | 1996-IJ-CX-0028 | |
| Validation of a DNA Method for the Individualization of Plant Evidence (pdf, 19 pages) | Non-human DNA | Heather Miller Coyle, Gary Shutler, Lois Tully, Elaine Pagliaro, Albert Harper | Final Grant Report | 2005 | University of New Haven | 2001-IJ-CX-K011 | |
| An STR forensic typing system for genetic individualization of domestic cat (Felis catus) samples | Non-human DNA | Menotti-Raymond MA, David VA, Wachter LL, Butler JM, O'Brien SJ | J Forensic Sci. 2005 Sep; 50(5):1061-1070. | 2005 | Laboratory for Genomic Research, National Cancer Institute | 1999-IJ-CX-A079 | |
| U.S. population data for the multi-copy Y-STR locus DYS464. | Y Chromosome | Butler JM, Schoske R. | J Forensic Sci. 2005 Jul; 50(4):975-7 | 2005 | National Institute of Standards and Technology | 2003-IJ-R-029 | |
| Chromosomal duplications along the Y-chromosome and their potential impact on Y-STR interpretation. | Y Chromosome | Butler JM, Decker AE, Kline MC, Vallone PM | J Forensic Sci. 2005 Jul; 50(4):853-9. | 2005 | National Institute of Standards and Technology | 2003-IJ-R-029 | |
| DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. | Y Chromosome | Gusmao L, Butler JM, Carracedo A, Gill P, Kayser M, Mayr WR, Morling N, Prinz M, Roewer L, Tyler-Smith C, Schneider PM. | Int J Legal Med. 2005 Aug 26;:1-10 | 2005 | National Institute of Standards and Technology | 2003-IJ-R-029 | |
| A study on the effects of degradation and template concentration on the amplification efficiency of the STR Miniplex primer sets. | Compromised DNA Evidence | Chung DT, Drabek J, Opel KL, Butler JM, McCord BR. | J Forensic Sci. 2004 Jul; 49(4):733-40. | 2004 | Ohio University | 2002-IJ-CX-K007 | |
| Characterization of UVC-induced DNA damage in bloodstains: forensic implications | Compromised DNA Evidence | Hall A, Ballantyne J. | Anal Bioanal Chem. 2004 380:72-83 | 2004 | University of Central Florida | 2002-IJ-CX-K001 | |
| Concordance study between Miniplex assays and a commercial STR typing kit. | Compromised DNA Evidence | Drabek J, Chung DT, Butler JM, McCord BR. | J Forensic Sci. 2004 Jul; 49(4):859-60. | 2004 | Ohio University | 2002-IJ-CX-K007 | |
| Constructing STR Multiplex Assays. | General Tools and Information | Butler JM | Methods Mol Biol. 2004; 297:53-66. | 2004 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| NIST mixed stain study 3: signal intensity balance in commercial short tandem repeat multiplexes. | General Tools and Information | Duewer DL, Kline MC, Redman JW, Butler JM | Anal Chem. 2004 Dec 1; 76(23):6928-34 | 2004 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| AutoDimer: a screening tool for primer-dimer and hairpin structures. | General Tools and Information | Vallone PM and Butler JM | Biotechniques. 2004 Aug; 37(2):226-31. | 2004 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Forensic DNA typing by capillary electrophoresis using the ABI Prism 310 and 3100 genetic analyzers for STR analysis. | Miniaturization and Automation | Butler JM, Buel E, Crivellente F, McCord BR. | Electrophoresis. 2004 Jun; 25(10-11):1397-412. | 2004 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Genotyping SNPs Using a UV-Photocleavable Oligonucleotide in MALDI-TOF MS. | Miniaturization and Automation | Vallone PM, Fahr K, Kostrzewa M. | Methods Mol Biol. 2004; 297:169-78. | 2004 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Multiple sample amplification and genotyping integrated on a single electronic microarray. | Miniaturization and Automation | Huang Y, Shirajian J, Schroder A, Yao Z, Summers T, Hodko D, Sosnowski R. | Electrophoresis. 2004 Oct: 25(18-19): 3106-16 | 2004 | Nanogen, Inc. | 1997-LB-VX-0004 | |
| A high-performance multilane microdevice system designed for the DNA forensics laboratory. | Miniaturization and Automation | Goedecke N, McKenna B, El-Difrawy S, Carey L, Matsudaira P, Ehrlich D. | Electrophoresis. 2004 Jun; 25(10-11):1678-86. | 2004 | Whitehead Institute for Biomedical Research | 1998-LB-VX-K022 | |
| A multiplex allele-specific primer extension assay for forensically informative SNPs distributed throughout the mitochondrial genome. | Mitochondrial DNA | Vallone PM, Just RS, Coble MD, Butler JM, Parsons TJ. | Int J Legal Med. 2004 Jun; 118(3):147-57. Epub 2004 Feb 04. | 2004 | American Registry of Pathology | 2000-IJ-CX-K010 | |
| Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians. | Mitochondrial DNA | Coble MD, Just RS, O'Callaghan JE, Letmanyi IH, Peterson CT, Irwin JA, Parsons TJ. | Int J Legal Med. 2004 Jun; 118(3):137-46. | 2004 | American Registry of Pathology | 2000-IJ-CX-K010 | |
| Toward increased utility of mtDNA in forensic identifications. | Mitochondrial DNA | Just RS, Irwin JA, O'Callaghan JE, Saunier JL, Coble MD, Vallone PM, Butler JM, Barritt SM, Parsons TJ. | Forensic Sci Int. 2004 Dec 2; 146 Suppl:S147-9. | 2004 | American Registry of Pathology | 2000-IJ-CX-K010 | |
| Mitochondrial DNA and STR analyses of maggot crop contents: effect of specimen preservation technique. | Non-Human DNA | Linville JG, Hayes J, Wells JD. | J Forensic Sci. 2004 Mar; 49(2):341-4. | 2004 | University of Alabama at Birmingham | 1999-IJ-CX-0034 | |
| SWGDAM developmental validation of a 19-locus Y-STR system for forensic casework. | Y Chromosome | Daniels DL, Hall AM, Ballantyne J. | J Forensic Sci. 2004 Jul; 49(4):668-83. | 2004 | University of Central Florida | 1998-IJ-CX-K003 | |
| High-throughput Y-STR typing of U.S. populations with 27 regions of the Y chromosome using two multiplex PCR assays. | Y Chromosome | Schoske R, Vallone PM, Kline MC, Redman JW, Butler JM. | Forensic Sci Int. 2004 Jan 28; 139(2-3):107-21. | 2004 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Multiplexed assays for evaluation of Y-SNP markers in U.S. populations. (pdf, 3 pages) | Y Chromosome | Vallone, P.M. and Butler, J.M. | Progress in Forensic Genetics 10, Elsevier Science: Amsterdam, The Netherlands, International Congress Series 2004; 1261, 85-87. | 2004 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| A highly discriminating 21 locus Y-STR "megaplex" system designed to augment the minimal haplotype loci for forensic casework. | Y Chromosome | Hanson EK, Ballantyne J. | J Forensic Sci. 2004 Jan; 49(1):40-51. | 2004 | University of Central Florida | 1998-IJ-CX-K003 | |
| Duplication of DYS19 flanking regions in other parts of the Y chromosome. | Y Chromosome | Butler JM and Schoske R | Int J Legal Med. 2004 Jun; 118(3):178-83 | 2004 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Y-SNP typing of U.S. African American and Caucasian samples using allele-specific hybridization and primer extension. | Y Chromosome | Vallone PM, Butler JM. | J Forensic Sci. 2004 Jul; 49(4):723-32. | 2004 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Mobile element-based assay for human gender determination. | Alternative Genetic Markers | Hedges DJ, Walker JA, Callinan PA, Shewale JG, Sinha SK, Batzer MA. | Anal Biochem. 2003 Jan 1; 312(1):77-9. | 2003 | Louisiana State University Medical Center, School of Dentistry | 2001-IJ-CX-K004 | |
| The development of reduced size STR amplicons as tools for analysis of degraded DNA. | Compromised DNA Evidence | Butler JM, Shen Y, McCord BR. | J Forensic Sci. 2003 Sep; 48(5):1054-64. | 2003 | Ohio University | 2002-IJ-CX-K007 | |
| SLLP1, a unique, intra-acrosomal, non-bacteriolytic, c lysozyme-like protein of human spermatozoa. | General Tools and Information | Mandal A, Klotz KL, Shetty J, Jayes FL, Wolkowicz MJ, Bolling LC, Coonrod SA, Black MB, Diekman AB, Haystead TA, Flickinger CJ, Herr JC. | Biol Reprod. 2003 May; 68(5):1525-37. Epub 2002 Nov 27. | 2003 | University of Virginia | 2000-IJ-CX-K013 | |
| The feasibility of external blind DNA proficiency testing. II. Experience with actual blind tests | General Tools and Information | Peterson JL, Crim D, Lin G, Ho M, Chen Y, Gaensslen RE | J Forensic Sci Jan 2003, vol. 48, No. 1, 32-40 | 2003 | University of Illinois at Chicago | 1996-DN-VX-0001 | |
| NIST Mixed Stain Study 3: DNA quantitation accuracy and its influence on short tandem repeat multiplex signal intensity. | General Tools and Information | Kline MC, Duewer DL, Redman JW, Butler JM. | Anal Chem. 2003 May 15; 75(10):2463-9. | 2003 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| The feasibility of external blind DNA proficiency testing. I. Background and findings | General Tools and Information | Peterson JL, Crim D, Lin G, Ho M, Chen Y, Gaensslen RE | J Forensic Sci Jan 2003, vol. 48, No. 1, 21-31 | 2003 | University of Illinois at Chicago | 1996-DN-VX-0001 | |
| Allele frequencies for 15 autosomal STR loci on U.S. Caucasian, African American, and Hispanic populations. | General Tools and Information | Butler JM, Schoske R, Vallone PM, Redman JW, Kline MC. | J Forensic Sci. 2003 Jul; 48(4):908-11. | 2003 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Extraction and analysis of human nuclear and mitochondrial DNA from electron beam irradiated envelopes. | General Tools and Information | Withrow AG, Sikorsky J, Downs JC, Fenger T. | J Forensic Sci. 2003 Nov; 48(6):1302-8. | 2003 | Marshall University | 2001-RC-CX-K002 | |
| SAMP14, a novel, acrosomal membrane-associated, glycosylphosphatidylinositol-anchored member of the Ly-6/urokinase-type plasminogen activator receptor superfamily with a role in sperm-egg interaction. | General Tools and Information | Shetty J, Wolkowicz MJ, Digilio LC, Klotz KL, Jayes FL, Diekman AB, Westbrook VA, Farris EM, Hao Z, Coonrod SA, Flickinger CJ, Herr JC. | J Biol Chem. 2003 Aug 15; 278(33):30506-15. Epub 2003 Jun 04. | 2003 | University of Virginia | 2000-IJ-CX-K013 | |
| Development of an Alu-based, QSY 7-labeled primer PCR method for quantitation of human DNA in forensic samples. | Human DNA Quantitation | Nicklas JA, Buel E. | Journal of Forensic Science 2003 Mar; 48(2):282-91. | 2003 | Vermont Department of Public Safety | 2000-IJ-CX-K012 | |
| Development of an Alu-based, real-time PCR method for quantitation of human DNA in forensic samples. | Human DNA Quantitation | Nicklas JA, Buel E. | Journal of Forensic Science. 2003 Sep; 48(5):936-44. | 2003 | Vermont Department of Public Safety | 2000-IJ-CX-K012 | |
| Quantification of DNA in forensic samples. | Human DNA Quantitation | Nicklas JA, Buel E. | Anal Bioanal Chem. 2003 Aug; 376(8):1160-7. Epub 2003 May 09. | 2003 | Vermont Department of Public Safety | 2000-IJ-CX-K012 | |
| Comparison of the complete mtDNA genome sequences of human cell lines – HL-60 and GM10742A – from individuals with pro-myelocytic leukemia and leber hereditary optic neuropathy, respectively, and the inclusion of HL-60 in the NIST human mitochondrial DNA standard reference material – SRM 2392-I | Mitochondrial DNA | Levin BC, Holland KA, Hancock DK, Coble M, Parsons TJ, Kienker LJ, Williams DW, Jones M, Richie KL | Mitochondrion, January 01, 2003 | 2003 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Identification of human remains by immobilized sequence-specific oligonucleotide probe analysis of mtDNA hypervariable regions I and II. | Mitochondrial DNA | Gabriel MN, Calloway CD, Reynolds RL, Primorac D. | Croat Med J. 2003 Jun; 44(3):293-8. | 2003 | Children's Hospital, Oakland Research Institute | 1996-IJ-CX-0028 | |
| An Overview of DNA Methods for the Identification and Individualization of Marijuana | Non-human DNA | Coyle HM, Palmbach T, Juliano N, Ladd C, Lee HC | Croatian Medical Journal 2003 44(3):315-321 | 2003 | University of New Haven | 2001-IJ-CX-K011 | |
| Quantitative polymerase chain reaction-based assay for estimating DNA yield extracted from domestic cat specimens. | Non-Human DNA | Menotti-Raymond M, David V, Wachter L, Yuhki N, O'Brien SJ. | Croat Med J. 2003 Jun; 44(3):327-31. | 2003 | Laboratory for Genomic Research, National Cancer Institute | 1999-IJ-CX-A079 | |
| The development of an 18-locus Y-STR system for forensic casework. | Y Chromosome | Hall A, Ballantyne J. | Anal Bioanal Chem. 2003 Aug; 376(8):1234-46. | 2003 | University of Central Florida | 1998-IJ-CX-K003 | |
| Multiplex PCR design strategy used for the simultaneous amplification of 10 Y chromosome short tandem repeat (STR) loci. | Y Chromosome | Schoske R, Vallone PM, Ruitberg CM, Butler JM. | Anal Bioanal Chem. 2003 Feb; 375(3):333-43. | 2003 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Novel Y-STR typing strategies reveal the genetic profile of the semen donor in extended interval post-coital cervicovaginal samples. | Y Chromosome | Hall A, Ballantyne J. | Forensic Sci Int. 2003 Sep 9; 136(1-3):58-72 | 2003 | University of Central Florida | 1998-IJ-CX-K003 | |
| Highly multiplexed assays for measuring polymorphisms on the Y-chromosome (pdf, 5 pages) | Y Chromosome | Butler HM, Schoske R, Vallone PM | Progress in Forensic Genetics 9 (Brinkmann, B. and Carracedo, A., eds.), Elsevier Science: Amsterdamn, The Netherlands, International Congress Series 1239, pp. 301-305 2003 | 2003 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Recent developments in Y-short tandem repeat and Y-single nucleotide polymorphism analysis (pdf, 21 pages) | Y Chromosome | Butler JM | Forensic. Sci. Rev. 2003 15:91-111 | 2003 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| A comprehensive analysis of recently integrated human Ta L1 elements. | Alternative Genetic Markers | Myers JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD, Henke J, Henke L, Moran JV, Jorde LB, Batzer MA. | Am J Hum Genet. 2002 Aug; 71(2):312-26. Epub 2002 Jun 17. | 2002 | Louisiana State University Medical Center, School of Dentistry | 2001-IJ-CX-K004 | |
| Alu repeats and human genomic diversity. | Alternative Genetic Markers | Batzer MA, Deininger PL. | Nat Rev Genet. 2002 May; 3(5):370-9. | 2002 | Louisiana State University Medical Center, School of Dentistry | 2001-IJ-CX-K004 | |
| Mammalian retroelements. | Alternative Genetic Markers | Deininger PL, Batzer MA. | Genome Res. 2002 Oct; 12(10):1455-65. | 2002 | Louisiana State University Medical Center, School of Dentistry | 2001-IJ-CX-K004 | |
| Non-traditional Alu evolution and primate genomic diversity. | Alternative Genetic Markers | Roy-Engel AM, Carroll ML, El-Sawy M, Salem AH, Garber RK, Nguyen SV, Deininger PL, Batzer MA. | J Mol Biol. 2002 Mar 8; 316(5):1033-40. | 2002 | Louisiana State University Medical Center, School of Dentistry | 2001-IJ-CX-K004 | |
| Polymerase chain reaction amplification of DNA from aged blood stains: quantitative evaluation of the "suitability for purpose" of four filter papers as archival media. | General Tools and Information | Kline MC, Duewer DL, Redman JW, Butler JM, Boyer DA. | Anal Chem. 2002 Apr 15; 74(8):1863-9. | 2002 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| A strategy for examining complex mixtures of deoxyoligonucleotides using ion-pair-reverse-phase high-performance liquid chromatography, matrix-assisted laser desorption ionization time-of-flight mass spectrometry, and informatics. | General Tools and Information | Vallone PM, Devaney JM, Marino MA, Butler JM | Anal Biochem. 2002 May 15; 304(2):257-65. | 2002 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Effect of sample preparation and pH-mediated sample stacking on the analysis of multiplexed short tandem repeats by capillary electrophoresis. | General Tools and Information | Crivellente F, McCord BR. | J Capillary Electrophor. 2002; 7(3-4):73-80. | 2002 | Ohio University | 1999-IJ-CX-K014 | |
| High-speed analysis of multiplexed short tandem repeats with an electrophoretic microdevice. | Miniaturization and Automation | Mitnik L, Carey L, Burger R, Desmarais S, Koutny L, Wernet O, Matsudaira P, Ehrlich D. | Electrophoresis. 2002 Mar; 23(5):719-26. | 2002 | Whitehead Institute for Biomedical Research | 1998-LB-VX-K022 | |
| Forensic value of 14 novel STRs on the human Y chromosome. | Y Chromosome | Redd AJ, Agellon AB, Kearney VA, Contreras VA, Karafet T, Park H, de Knijff P, Butler JM, Hammer MF. | Forensic Sci Int. 2002 Dec 4; 130(2-3):97-111. | 2002 | Arizona Board of Regents, University of Arizona | 2000-IJ-CX-K006 | |
| A novel multiplex for simultaneous amplification of 20 Y chromosome STR markers. | Y Chromosome | Butler JM, Schoske R, Vallone PM, Kline MC, Redd AJ, Hammer MF. | Forensic Sci Int. 2002 Sep 10; 129(1):10-24. | 2002 | Arizona Board of Regents, University of Arizona | 2000-IJ-CX-K006 | |
| Alu insertion polymorphisms for the study of human genomic diversity. | Alternative Genetic Markers | Roy-Engel AM, Carroll ML, Vogel E, Garber RK, Nguyen SV, Salem AH, Batzer MA, Deininger PL. | Genetics. 2001 Sep; 159(1):279-90. | 2001 | Louisiana State University Medical Center, School of Dentistry | 1999-IJ-CX-K009 | |
| STRBase: a short tandem repeat DNA database for the human identity testing community. | General Tools and Information | Ruitberg CM, Reeder DJ, Butler JM. | Nucleic Acids Res. 2001 Jan 1; 29(1):320-2. | 2001 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Temperature and pH studies of short tandem repeat systems using capillary electrophoresis at elevated pH. | General Tools and Information | Nock T, Dove J, McCord B, Mao D. | Electrophoresis. 2001; 22(4):755-62. | 2001 | Ohio University | 1999-IJ-CX-K014 | |
| Genotyping of two mutations in the HFE gene using single-base extension and high-performance liquid chromatography. | General Tools and Information | Devaney JM, Pettit EL, Kaler SG, Vallone PM, Butler JM, Marino MA. | Anal Chem. 2001 Feb 1; 73(3):620-4. | 2001 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Linear mixture analysis: a mathematical approach to resolving mixed DNA samples. | General Tools and Information | Perlin MW, Szabady B. | J Forensic Sci. 2001 Nov;46(6):1372-8. | 2001 | Cybergenetics Co. | 2001-IJ-CX-K003 | |
| Quality control of PCR primers used in multiplex STR amplification reactions. | General Tools and Information | Butler JM, Devaney JM, Marino MA, Vallone PM. | Forensic Sci Int. 2001 Jun 1; 119(1):87-96. | 2001 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Capillary electrophoresis as a tool for optimization of multiplex PCR reactions. | General Tools and Information | Butler JM, Ruitberg CM, Vallone PM. | Fresenius J Anal Chem. 2001 Feb; 369(3-4):200-5. | 2001 | National Institute of Standards and Technology | 1999-IJ-R-A094 | |
| Increasing the forensic discrimination of mitochondrial DNA testing through analysis of the entire mitochondrial DNA genome. | Mitochondrial DNA | Parsons TJ, Coble MD. | Croat Med J. 2001 Jun;42(3):304-9. | 2001 | American Registry of Pathology | 2000-IJ-CX-K010 | |
| Diversity and heterogeneity in mitochondrial DNA of North American populations. | Mitochondrial DNA | Melton T, Clifford S, Kayser M, Nasidze I, Batzer M, Stoneking M. | J Forensic Sci. 2001 Jan; 46(1):46-52. | 2001 | Pennsylvania State University | 1992-IJ-CX-K040 | |
| Population variation of human mitochondrial DNA hypervariable regions I and II in 105 Croatian individuals demonstrated by immobilized sequence-specific oligonucleotide probe analysis. | Mitochondrial DNA | Gabriel MN, Calloway CD, Reynolds RL, Andelinovic S, Primorac D. | Croat Med J. 2001 Jun; 42(3):328-35. | 2001 | Children's Hospital, Oakland Research Institute | 1996-IJ-CX-0028 | |
| Human and insect mitochondrial DNA analysis from maggots. | Non-Human DNA | Wells JD, Pape T, Sperling FA. | J Forensic Sci. 2001 May; 46(3):685-7. | 2001 | University of Alabama at Birmingham | 1999-IJ-CX-0034 | |
| DNA-based identification and molecular systematics of forensically important Sarcophagidae (Diptera). | Non-Human DNA | Wells JD, Pape T, Sperling FA. | J Forensic Sci. 2001 Sep; 46(5):1098-102. | 2001 | University of Alabama at Birmingham | 1999-IJ-CX-0034 | |
| DNA-based identification of forensically important Chrysomyinae (Diptera: Calliphoridae). | Non-Human DNA | Wells JD, Sperling FA. | Forensic Sci Int. 2001 Aug 15; 120(1-2):110-5. | 2001 | University of Alabama at Birmingham | 1999-IJ-CX-0034 | |
| Alu insertion polymorphisms in NW Africa and the Iberian Peninsula: evidence for a strong genetic boundary through the Gibraltar Straits. | Alternative Genetic Markers | Comas D, Calafell F, Benchemsi N, Helal A, Lefranc G, Stoneking M, Batzer MA, Bertranpetit J, Sajantila A. | Hum Genet. 2000 Oct; 107(4):312-9. | 2000 | Louisiana State University Medical Center, School of Dentistry | 1999-IJ-CX-K009 | |
| Potential gene conversion and source genes for recently integrated Alu elements. | Alternative Genetic Markers | Roy AM, Carroll ML, Nguyen SV, Salem AH, Oldridge M, Wilkie AO, Batzer MA, Deininger PL. | Genome Res. 2000 Oct; 10(10):1485-95. | 2000 | Louisiana State University Medical Center, School of Dentistry | 1999-IJ-CX-K009 | |
| Reading between the LINEs: human genomic variation induced by LINE-1 retrotransposition. | Alternative Genetic Markers | Sheen FM, Sherry ST, Risch GM, Robichaux M, Nasidze I, Stoneking M, Batzer MA, Swergold GD. | Genome Res. 2000 Oct; 10(10):1496-508 | 2000 | Louisiana State University Medical Center, School of Dentistry | 1999-IJ-CX-K009 | |
| World population data for the HLA-DQA1, PM and D1S80 loci with least and most common profile frequencies for combinations of loci estimated following NRC II guidelines. | General Tools and Information | Peterson BL, Su B, Chakraborty R, Budowle B, Gaensslen RE. | J Forensic Sci. 2000 Jan;45(1):118-46. | 2000 | University of Illinois at Chicago | 1998-VB-R-018 | |
| Rapid, high fidelity analysis of simple sequence repeats on an electronically active DNA microchip. | Miniaturization and Automation | Radtkey R, Feng L, Muralhidar M, Duhon M, Canter D, DiPierro D, Fallon S, Tu E, McElfresh K, Nerenberg M, Sosnowski R. | Nucleic Acids Res. 2000 Apr 1; 28(7):E17. | 2000 | Nanogen, Inc. | 1997-LB-VX-0004 | |
| The frequency of heteroplasmy in the HVII region of mtDNA differs across tissue types and increases with age. | Mitochondrial DNA | Calloway CD, Reynolds RL, Herrin GL Jr, Anderson WW. | Am J Hum Genet. 2000 Apr; 66(4):1384-97. Epub 2000 Mar 17. | 2000 | Children's Hospital, Oakland Research Institute | 1996-IJ-CX-0028 | |
| Locus-specific brackets for reliable typing of Y-chromosome short tandem repeat markers. | Y Chromosome | Butler JM, Appleby JE, Duewer DL. | J Forensic Sci. 2000 Jan;45(1):118-46. | 2000 | National Institute of Standards and Technology | 2003-IJ-R-029 | |
| Recently Integrated Human Alu Repeats: Finding Needles in the Haystack | Alternative Genetic Markers | Roy AM, Carroll ML, Kass DH, Nguyen SV, Salem AH, Batzer MA, Deininger PL. | Genetica. 1999; 107(1-3):149-61. | 1999 | Louisiana State University Medical Center, School of Dentistry | 1999-IJ-CX-K009 | |
| Two-color multiplexed analysis of eight short tandem repeat loci with an electrophoretic microdevice. | Miniaturization and Automation | Schmalzing D, Koutny L, Chisholm D, Adourian A, Matsudaira P, Ehrlich D. | Anal Biochem. 1999 May 15; 270(1):148-52. | 1999 | Whitehead Institute for Biomedical Research | 1998-LB-VX-K022 | |
| Reliable genotyping of short tandem repeat loci without an allelic ladder using time-of-flight mass spectrometry. | Miniaturization and Automation | Butler JM, Li J, Shaler TA, Monforte JA, Becker CH. | Int J Legal Med. 1999; 112(1):45-9 | 1999 | Genetrace Systems, Inc. | 1997-LB-VX-0003 | |
| Single nucleotide polymorphism determination using primer extension and time-of-flight mass spectrometry. | Miniaturization and Automation | Li J, Butler JM, Tan Y, Lin H, Royer S, Ohler L, Shaler TA, Hunter JM, Pollart DJ, Monforte JA, Becker CH. | Electrophoresis. 1999 Jun; 20(6):1258-65. | 1999 | Genetrace Systems, Inc. | 1997-LB-VX-0003 |
