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Mus musculus GRCm38.p1
Several institutions are finishing the mouse genome sequence, following the initial draft assembly generated by the Mouse Genome Sequencing Consortium.
Type
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Name
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RefSeq
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INSDC
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Size (Mb)
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GC%
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Protein
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rRNA
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tRNA
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Other RNA
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Gene
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Pseudogene
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Chr | 1 | NC_000067.5 | CM000994.1 | 197.2 | 41.4 | 1,511 | - | 38 | 241 | 1,906 | 503 | | Chr | 2 | NC_000068.6 | CM000995.1 | 181.75 | 42.2 | 2,335 | - | 9 | 302 | 2,664 | 558 | | Chr | 3 | NC_000069.5 | CM000996.1 | 159.6 | 40.6 | 1,292 | - | 43 | 205 | 1,611 | 444 | | Chr | 4 | NC_000070.5 | CM000997.1 | 155.63 | 42.5 | 1,644 | - | 24 | 194 | 1,953 | 441 | | Chr | 5 | NC_000071.5 | CM000998.1 | 152.54 | 42.8 | 1,549 | - | 13 | 218 | 1,788 | 348 | | Chr | 6 | NC_000072.5 | CM000999.1 | 149.52 | 41.6 | 1,443 | 2 | 60 | 208 | 2,006 | 530 | | Chr | 7 | NC_000073.5 | CM001000.1 | 152.53 | 43.5 | 2,415 | - | 12 | 263 | 3,111 | 837 | | Chr | 8 | NC_000074.5 | CM001001.1 | 131.74 | 42.8 | 1,255 | 2 | 7 | 172 | 1,530 | 331 | | Chr | 9 | NC_000075.5 | CM001002.1 | 124.08 | 42.9 | 1,469 | 1 | 8 | 184 | 1,733 | 352 | | Chr | 10 | NC_000076.5 | CM001003.1 | 129.99 | 41.6 | 1,277 | - | 13 | 153 | 1,529 | 367 | | Chr | 11 | NC_000077.5 | CM001004.1 | 121.84 | 44.0 | 1,982 | - | 48 | 267 | 2,182 | 328 | | Chr | 12 | NC_000078.5 | CM001005.1 | 121.26 | 42.0 | 833 | - | 4 | 212 | 1,481 | 482 | | Chr | 13 | NC_000079.5 | CM001006.1 | 120.28 | 41.9 | 998 | - | 106 | 145 | 1,391 | 416 | | Chr | 14 | NC_000080.5 | CM001007.1 | 125.2 | 41.4 | 1,058 | - | 13 | 137 | 1,630 | 457 | | Chr | 15 | NC_000081.5 | CM001008.1 | 103.5 | 42.2 | 1,007 | - | 4 | 152 | 1,181 | 259 | | Chr | 16 | NC_000082.5 | CM001009.1 | 98.32 | 41.2 | 851 | - | 6 | 109 | 1,019 | 230 | | Chr | 17 | NC_000083.5 | CM001010.1 | 95.27 | 43.0 | 1,323 | 1 | 14 | 174 | 1,617 | 406 | | Chr | 18 | NC_000084.5 | CM001011.1 | 90.77 | 41.7 | 647 | - | - | 91 | 844 | 246 | | Chr | 19 | NC_000085.5 | CM001012.1 | 61.34 | 43.1 | 915 | - | 11 | 123 | 1,030 | 208 | | Chr | X | NC_000086.6 | CM001013.1 | 166.65 | 39.5 | 1,230 | - | 34 | 206 | 1,996 | 833 | | Chr | Y | NC_000087.6 | CM001014.1 | 15.9 | 48.1 | 17 | - | - | 1 | 54 | 38 | | Chr | MT | NC_005089.1 | AY172335.1 | 0.016299 | 36.7 | 13 | 2 | 22 | - | 37 | - | | Biological Properties
Click on chromosome name to open MapViewer Chromosomes [2] Scaffolds or contigs [2] SRA or Traces [17] No data [17] |
Organism | BioProject | Assembly | Status | Chrs | Organelles | Size (Mb) | GC% | Gene | Protein |
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Mus musculus | PRJNA169, PRJNA11777, PRJNA20689 | GRCm38.p1 | | 21 | 1 | 2,654.91 | 42.1 | 34,293 | 27,064 | Mus musculus | PRJNA16113, PRJNA11785 | Mm_Celera | | 21 | - | 2,775.06 | 42.6 | 33,410 | 26,803 | Mus musculus | PRJNA59879 | MmusALLPATHS2 ; MmusSOAP1 | | - | - | 2,279.15 | 40.3 | - | | Mus musculus | PRJNA13183 | ASM18119v1 | | - | - | 2,477.74 | 41.7 | - | | Mus musculus | PRJNA41995 | - | | - | - | - | - | - | |
See more...Clone ends | 1 | Epigenomics | 414 | Exome | 1 | Map | 7 | Other | 147 | Proteome | 10 | Targeted Locus (Loci) | 2 | Transcriptome or Gene expression | 6737 | Variation | 79 |
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- Intragenic enhancers act as alternative promoters. Kowalczyk MS, et al. Mol Cell 2012 Feb 24
- Haploinsufficiency of Dnmt1 impairs leukemia stem cell function through derepression of bivalent chromatin domains. Trowbridge JJ, et al. Genes Dev 2012 Feb 15
- Paired-end sequencing of Fosmid libraries by Illumina. Williams LJ, et al. Genome Res 2012 Sep 28
- Position-dependent FUS-RNA interactions regulate alternative splicing events and transcriptions. Ishigaki S, et al. Sci Rep 2012
- Deep-sequencing identification of the genomic targets of the cytidine deaminase AID and its cofactor RPA in B lymphocytes. Yamane A, et al. Nat Immunol 2011 Jan
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Gnerre S, et al. Proc Natl Acad Sci U S A 2011 Jan 25
- Modernizing reference genome assemblies. Church DM, et al. PLoS Biol 2011 Jul
- Repressor transcription factor 7-like 1 promotes adipogenic competency in precursor cells. Cristancho AG, et al. Proc Natl Acad Sci U S A 2011 Sep 27
- Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Schoenfelder S, et al. Nat Genet 2010 Jan
- Polycomb-like 2 associates with PRC2 and regulates transcriptional networks during mouse embryonic stem cell self-renewal and differentiation. Walker E, et al. Cell Stem Cell 2010 Feb 5
- H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome. Pauler FM, et al. Genome Res 2009 Feb
- Lineage-specific biology revealed by a finished genome assembly of the mouse. Church DM, et al. PLoS Biol 2009 May 5
- Insights into GATA-1-mediated gene activation versus repression via genome-wide chromatin occupancy analysis. Yu M, et al. Mol Cell 2009 Nov 25
- Mouse consomic strains: exploiting genetic divergence between Mus m. musculus and Mus m. domesticus subspecies. Gregorová S, et al. Genome Res 2008 Mar
- Divergent transcription from active promoters. Seila AC, et al. Science 2008 Dec 19
- mtDNA phylogeny and evolution of laboratory mouse strains. Goios A, et al. Genome Res 2007 Mar
- Nuclear DNA but not mtDNA controls tumor phenotypes in mouse cells. Akimoto M, et al. Biochem Biophys Res Commun 2005 Feb 25
- Revisiting the mouse mitochondrial DNA sequence. Bayona-Bafaluy MP, et al. Nucleic Acids Res 2003 Sep 15
- A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science 2002 May 31
- Initial sequencing and comparative analysis of the mouse genome. Mouse Genome Sequencing Consortium, et al. Nature 2002 Dec 5
- Unique mutations in mitochondrial DNA of senescence-accelerated mouse (SAM) strains. Mizutani J, et al. J Hered 2001 Jul-Aug
- A radiation hybrid transcript map of the mouse genome. Avner P, et al. Nat Genet 2001 Oct
- A radiation hybrid map of mouse genes. Hudson TJ, et al. Nat Genet 2001 Oct
- The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse. The Mouse Genome Database Group. Blake JA, et al. Nucleic Acids Res 2000 Jan 1
- Radiation hybrid map of the mouse genome. Van Etten WJ, et al. Nat Genet 1999 Aug
- A YAC-based physical map of the mouse genome. Nusbaum C, et al. Nat Genet 1999 Aug
- tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Lowe TM, et al. Nucleic Acids Res 1997 Mar 1
- A comprehensive large-insert yeast artificial chromosome library for physical mapping of the mouse genome. Haldi ML, et al. Mamm Genome 1996 Oct
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