http://pubchem.ncbi.nlm.nih.gov/pcnews.rss PubChem News PubChem announcement http://pubchem.ncbi.nlm.nih.gov/pcnews.html en-US Fri, 05 Oct 2012 13:40:18 -0400 PubChem Classification Browser <SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"> Use the new <SPAN class=Apple-converted-space>&nbsp;</SPAN></SPAN><A style="BORDER-BOTTOM: 0px; TEXT-ALIGN: left; BORDER-LEFT: 0px; PADDING-BOTTOM: 0px; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; MARGIN: 0px; OUTLINE-STYLE: none; OUTLINE-COLOR: invert; PADDING-LEFT: 0px; OUTLINE-WIDTH: 0px; LETTER-SPACING: normal; PADDING-RIGHT: 0px; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); VERTICAL-ALIGN: baseline; BORDER-TOP: 0px; BORDER-RIGHT: 0px; WORD-SPACING: 0px; TEXT-DECORATION: none; PADDING-TOP: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="//pubchem.ncbi.nlm.nih.gov/classification/">PubChem Classification Browser</A><SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN> to browse PubChem data using a classification of interest, or to search for PubChem records annotated with the desired classification system and term. <SPAN class=Apple-converted-space>&nbsp;</SPAN></SPAN><A style="BORDER-BOTTOM: 0px; TEXT-ALIGN: left; BORDER-LEFT: 0px; PADDING-BOTTOM: 0px; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; MARGIN: 0px; OUTLINE-STYLE: none; OUTLINE-COLOR: invert; PADDING-LEFT: 0px; OUTLINE-WIDTH: 0px; LETTER-SPACING: normal; PADDING-RIGHT: 0px; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); VERTICAL-ALIGN: baseline; BORDER-TOP: 0px; BORDER-RIGHT: 0px; WORD-SPACING: 0px; TEXT-DECORATION: none; PADDING-TOP: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="//pubchem.ncbi.nlm.nih.gov/classification/docs/classification_help.html#ExamplesOfUse ">Illustrated examples</A><SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN> of search results for PubChem Compounds classified as methotrexate, and for PubChem BioAssays that tested protein targets involved in DNA repair, are available in the help document.</SPAN> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 05 Oct 2012 13:40:18 -0400 tag:www.tristana.org,2012:2055FCEC-4A7F-4C23-98FC-B688122D15FA.41187.5689017708 PubChem Widgets: Show data your way <SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"> Show data your way with the new PubChem Widgets.&nbsp; Display concise tables of patents, bioactivities, and literature for PubChem data in your web pages with three easy steps. See the <SPAN class=Apple-converted-space>&nbsp;</SPAN></SPAN><A style="BORDER-BOTTOM: 0px; TEXT-ALIGN: left; BORDER-LEFT: 0px; PADDING-BOTTOM: 0px; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; MARGIN: 0px; OUTLINE-STYLE: none; OUTLINE-COLOR: invert; PADDING-LEFT: 0px; OUTLINE-WIDTH: 0px; LETTER-SPACING: normal; PADDING-RIGHT: 0px; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); VERTICAL-ALIGN: baseline; BORDER-TOP: 0px; BORDER-RIGHT: 0px; WORD-SPACING: 0px; TEXT-DECORATION: none; PADDING-TOP: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="//pubchem.ncbi.nlm.nih.gov/widget/docs/widget_help.html">help document</A><SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN> for details and examples of the data views available.</SPAN> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 01 Oct 2012 11:36:05 -0400 tag:www.tristana.org,2012:69A4D6DE-264E-418F-AE6E-0FBDBAED6165.41183.473151412 SCRIPDB deposited structures in PubChem <SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px">More than 6 million<SPAN class=Apple-converted-space>&nbsp;</SPAN></SPAN><A style="BORDER-BOTTOM: 0px; TEXT-ALIGN: left; BORDER-LEFT: 0px; PADDING-BOTTOM: 0px; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; MARGIN: 0px; OUTLINE-STYLE: none; OUTLINE-COLOR: invert; PADDING-LEFT: 0px; OUTLINE-WIDTH: 0px; LETTER-SPACING: normal; PADDING-RIGHT: 0px; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); VERTICAL-ALIGN: baseline; BORDER-TOP: 0px; BORDER-RIGHT: 0px; WORD-SPACING: 0px; TEXT-DECORATION: none; PADDING-TOP: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22scripdb%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">structures</A><SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN>from<SPAN class=Apple-converted-space>&nbsp;</SPAN></SPAN><A style="BORDER-BOTTOM: 0px; TEXT-ALIGN: left; BORDER-LEFT: 0px; PADDING-BOTTOM: 0px; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; MARGIN: 0px; OUTLINE-STYLE: none; OUTLINE-COLOR: invert; PADDING-LEFT: 0px; OUTLINE-WIDTH: 0px; LETTER-SPACING: normal; PADDING-RIGHT: 0px; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); VERTICAL-ALIGN: baseline; BORDER-TOP: 0px; BORDER-RIGHT: 0px; WORD-SPACING: 0px; TEXT-DECORATION: none; PADDING-TOP: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="http://dcv.uhnres.utoronto.ca/SCRIPDB/"><B style="BORDER-BOTTOM: 0px; BORDER-LEFT: 0px; PADDING-BOTTOM: 0px; MARGIN: 0px; OUTLINE-STYLE: none; OUTLINE-COLOR: invert; PADDING-LEFT: 0px; OUTLINE-WIDTH: 0px; PADDING-RIGHT: 0px; FONT-SIZE: 13px; VERTICAL-ALIGN: baseline; BORDER-TOP: 0px; FONT-WEIGHT: 700; BORDER-RIGHT: 0px; PADDING-TOP: 0px">SCRIPDB</B></A><SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN>are now available in PubChem. Extracted from the<SPAN class=Apple-converted-space>&nbsp;</SPAN></SPAN><A style="BORDER-BOTTOM: 0px; TEXT-ALIGN: left; BORDER-LEFT: 0px; PADDING-BOTTOM: 0px; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; MARGIN: 0px; OUTLINE-STYLE: none; OUTLINE-COLOR: invert; PADDING-LEFT: 0px; OUTLINE-WIDTH: 0px; LETTER-SPACING: normal; PADDING-RIGHT: 0px; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); VERTICAL-ALIGN: baseline; BORDER-TOP: 0px; BORDER-RIGHT: 0px; WORD-SPACING: 0px; TEXT-DECORATION: none; PADDING-TOP: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="http://www.uspto.gov/patents/init_events/cwupilot.jsp">complex work units</A><SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN>of more than 300,000<SPAN class=Apple-converted-space>&nbsp;</SPAN></SPAN><A style="BORDER-BOTTOM: 0px; TEXT-ALIGN: left; BORDER-LEFT: 0px; PADDING-BOTTOM: 0px; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; MARGIN: 0px; OUTLINE-STYLE: none; OUTLINE-COLOR: invert; PADDING-LEFT: 0px; OUTLINE-WIDTH: 0px; LETTER-SPACING: normal; PADDING-RIGHT: 0px; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); VERTICAL-ALIGN: baseline; BORDER-TOP: 0px; BORDER-RIGHT: 0px; WORD-SPACING: 0px; TEXT-DECORATION: none; PADDING-TOP: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="http://www.uspto.gov/">USPTO</A><SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN>patents between the years of 2001-2012, these PubChem Substance records link to both SCRIPDB and the USPTO websites. A<SPAN class=Apple-converted-space>&nbsp;</SPAN></SPAN><A style="BORDER-BOTTOM: 0px; TEXT-ALIGN: left; BORDER-LEFT: 0px; PADDING-BOTTOM: 0px; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; MARGIN: 0px; OUTLINE-STYLE: none; OUTLINE-COLOR: invert; PADDING-LEFT: 0px; OUTLINE-WIDTH: 0px; LETTER-SPACING: normal; PADDING-RIGHT: 0px; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); VERTICAL-ALIGN: baseline; BORDER-TOP: 0px; BORDER-RIGHT: 0px; WORD-SPACING: 0px; TEXT-DECORATION: none; PADDING-TOP: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245107/">full text article</A><SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN>describing the SCRIPDB project is available in PubMed Central.</SPAN> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 19 Sep 2012 14:31:01 -0400 tag:www.tristana.org,2012:D8EA4B3D-14CE-412B-BFBC-4647FF6B3D24.41171.6034282755 PubChem HTTPS compatible <SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px">PubChem databases and services are now Hypertext Transfer Protocol Secure (HTTPS) compatible, allowing one to use encryption in their interactions with PubChem.</SPAN> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 17 Sep 2012 15:24:53 -0400 tag:www.tristana.org,2012:575067E1-2BA8-486F-B66B-F2EC38AA9607.41169.6415723148 The PUG REST 1.0 release <SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px">The PUG REST 1.0 version is now available! It is a REST-style interface for accessing PubChem data and services through simple HTTP requests, for use in scripts, javascript embedded in web pages, and 3rd party applications, without the overhead of XML, SOAP envelopes, etc., that are required for other versions of PUG. PUG REST can deliver customized output for individual PubChem records, or for small sets of records, in a way that is not possible with other PubChem services. For example, it can retrieve specific data elements, such as molecular weight or a chemical structure image, for a molecule of interest without having to download its full record. PUG REST can also accept a variety of input types, such as chemical name, InChIKey, SMILES, and more, in addition to the traditional SID, CID, and AID numeric identifiers. The<SPAN class=Apple-converted-space>&nbsp;</SPAN></SPAN><A style="BORDER-BOTTOM: 0px; TEXT-ALIGN: left; BORDER-LEFT: 0px; PADDING-BOTTOM: 0px; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; MARGIN: 0px; OUTLINE-STYLE: none; OUTLINE-COLOR: invert; PADDING-LEFT: 0px; OUTLINE-WIDTH: 0px; LETTER-SPACING: normal; PADDING-RIGHT: 0px; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); VERTICAL-ALIGN: baseline; BORDER-TOP: 0px; BORDER-RIGHT: 0px; WORD-SPACING: 0px; TEXT-DECORATION: none; PADDING-TOP: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="http://pubchem.ncbi.nlm.nih.gov/pug_rest/PUG_REST.html">PUG REST help document</A><SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN>provides technical specifications for the syntax of HTTP requests and the available functions, and a new<SPAN class=Apple-converted-space>&nbsp;</SPAN></SPAN><A style="BORDER-BOTTOM: 0px; TEXT-ALIGN: left; BORDER-LEFT: 0px; PADDING-BOTTOM: 0px; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; MARGIN: 0px; OUTLINE-STYLE: none; OUTLINE-COLOR: invert; PADDING-LEFT: 0px; OUTLINE-WIDTH: 0px; LETTER-SPACING: normal; PADDING-RIGHT: 0px; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); VERTICAL-ALIGN: baseline; BORDER-TOP: 0px; BORDER-RIGHT: 0px; WORD-SPACING: 0px; TEXT-DECORATION: none; PADDING-TOP: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="http://pubchem.ncbi.nlm.nih.gov/pug_rest/PUG_REST_Tutorial.html">tutorial</A><SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN>provides some examples on how PUG REST can be used. PUG REST 1.0 replaces the April 2012 beta release and represents the stable final form of the tool. While new features may be still added, changes will be backward-compatible.</SPAN> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 13 Sep 2012 14:01:28 -0400 tag:www.tristana.org,2012:BDB44CAB-5896-405F-8023-0322B1D1FEBD.41165.5837685995 PubChem's 8th BDay <SPAN style="TEXT-ALIGN: left; WIDOWS: 2; TEXT-TRANSFORM: none; BACKGROUND-COLOR: rgb(255,255,255); TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 13px/17px arial, helvetica, clean, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(85,85,85); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px">PubChem reaches milestones on 8th birthday! More than 100 million live records are now available in PubChem Substance, and nearly 200 million outcomes are available in PubChem BioAssay, representing contributions from more than 200 depositors that have joined the PubChem project since its launch on September 16, 2004.</SPAN> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 12 Sep 2012 08:17:30 -0400 tag:www.tristana.org,2012:F75021E0-3EFC-48AC-8F2C-5F83F7F1B5C1.41164.3241806481 PubChem added Gene Ontology (GO) in BioAssay summary <P>The PubChem BioAssay summary pages now display the <A href="http://www.geneontology.org/">Gene Ontology (GO)</A> classification of the gene/protein target(s) that were tested by the bioassay. The GO terms are associated with each gene/protein in an automated way as part of the biosystems database data processing procedures, using the <A href="http://www.ncbi.nlm.nih.gov/Structure/biosystems/docs/biosystems_help.html#DataProcessingDirectLinks">method</A> described in the Biosystems help document. All GO terms that apply to the gene(s)/protein(s) tested by the bioassay are shown in the GO hierarchy, including: (1) biological processes, (2) cellular components, and (3) molecular functions. Clicking on any GO term in the hierarchy will retrieve all bioassays that have tested a protein(s) associated with that term. As an example, see the GO terms for the protein target that was tested by the glucocorticoid receptor (GR) redistribution assay (<A href="http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=450#aClass">AID 450</A>).<BR><BR>In addition, the PubChem BioAssay data summary for a compound now displays a graphical summary of the bioassays that have tested the compound, categorizing the bioassays by: (1) bioactivity outcomes (active, inactive, inconclusive, unspecified); (2) top targets; (3) bioactivity types (IC50, EC50, Potency, Ki, etc.); (4) bioassay types (screening, confirmatory, summary, other). The bar graphs are clickable and serve as filters to display data from the selected category, refreshing both the bar graphs and the tabular summary of bioassays to reflect the data subset you have selected. As an example, see the bioassay data summary for aspirin (<A href="http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?cid=2244">CID 2244</A>).</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html Pubchem Tue, 05 Jun 2012 17:33:55 -0400 tag:www.tristana.org,2012:4E920A72-2B8B-4208-B9D1-E863629833F5.41065.7304205093 PubChem PUG REST beta release <P><SPAN style="WIDOWS: 2; TEXT-TRANSFORM: none; TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 14px Verdana, Arial, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(102,102,102); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN style="WIDOWS: 2; TEXT-TRANSFORM: none; TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 14px Verdana, Arial, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(102,102,102); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px">PubChem PUG REST – a RESTful web interface to PubChem data and services. Documentation and examples are available at</SPAN><A style="WIDOWS: 2; TEXT-TRANSFORM: none; TEXT-INDENT: 0px; LETTER-SPACING: normal; FONT: 14px Verdana, Arial, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); WORD-SPACING: 0px; TEXT-DECORATION: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="http://pubchem.ncbi.nlm.nih.gov/pug_rest/">http://pubchem.ncbi.nlm.nih.gov/pug_rest/</A><SPAN style="WIDOWS: 2; TEXT-TRANSFORM: none; TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 14px Verdana, Arial, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(102,102,102); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN>. This service is considered to be in a beta state right now, meaning it is under active development and some changes may occur but the interface should be mostly stable. The purpose of this beta release is to make some basic functionality available now, and to invite feedback from the PubChem user community. Please try it out and tell us what you think; contact<SPAN class=Apple-converted-space>&nbsp;</SPAN></SPAN><A style="WIDOWS: 2; TEXT-TRANSFORM: none; TEXT-INDENT: 0px; LETTER-SPACING: normal; FONT: 14px Verdana, Arial, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; COLOR: rgb(0,86,204); WORD-SPACING: 0px; TEXT-DECORATION: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px" href="mailto:pubchem-help@ncbi.nlm.nih.gov">pubchem-help@ncbi.nlm.nih.gov</A><SPAN style="WIDOWS: 2; TEXT-TRANSFORM: none; TEXT-INDENT: 0px; LETTER-SPACING: normal; DISPLAY: inline !important; FONT: 14px Verdana, Arial, sans-serif; WHITE-SPACE: normal; ORPHANS: 2; FLOAT: none; COLOR: rgb(102,102,102); WORD-SPACING: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"><SPAN class=Apple-converted-space>&nbsp;</SPAN>with questions, problems, or suggestions for new features.</SPAN></SPAN></P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 24 Apr 2012 14:11:51 -0400 tag:www.tristana.org,2012:B37A8EA4-F863-4CA7-9133-A7EE60BBB810.41023.589066956 Therapeutic Target Database deposited structures in PubChem <A href="http://www.ncbi.nlm.nih.gov/pcsubstance?term=%22Therapeutic%20Targets%20Database%22%5Bsourcename%5D">Structures</A> from the <A href="http://bidd.nus.edu.sg/group/ttd/"><B>Therapeutic Target Database (TTD)</B></A> are now available in PubChem.<BR><BR>Therapeutic Target Database (TTD) is a database to provide information about the known and explored therapeutic protein and nucleic acid targets, the targeted disease, pathway information and the corresponding drugs directed at each of these targets. Also included in this database are links to relevant databases containing information about target function, sequence, 3D structure, ligand binding properties, enzyme nomenclature and drug structure, therapeutic class, clinical development status. All information provided are fully referenced. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 21 Feb 2012 16:57:53 -0400 tag:www.tristana.org,2012:32A054EA-3EE9-42DC-9D10-64A7C522F268.40960.6645328704 IBM contributed structures in PubChem <DIV class=newsblock>More than 2.5 million <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22IBM%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">structures</A> from the <A href="http://www-935.ibm.com/services/us/gbs/bao/siip/nih/"><B>IBM</B> BAO (Business Analytics and Optimization) strategic IP insight platform (SIIP)</A> are now available in PubChem, aggregating data from millions of patents and from the scientific literature through the year 2000. The chemical substances were extracted from the textual content, images, and symbols in patents and literature. The PubChem records link to the IBM web site, where files that list the patent numbers and PubMed IDs for each substance can be downloaded. See more <A href="http://www.prnewswire.com/news-releases/ibm-contributes-data-to-the-national-institutes-of-health-to-speed-drug-discovery-and-cancer-research-innovation-135275888.html">related news...</A></DIV><BR><BR> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 08 Dec 2011 18:18:00 -0400 tag:www.tristana.org,2011:8D97DD09-4628-4D95-9AD7-C0912CAD36C1.40885.6156054398 PubChem compound and substance summary updated PubChem updated the compound and substance summary pages to load faster, to include dramatically expanded biomedical annotation, and to give an updated look and feel. For example, the PubChem Compound summary page for <A href="http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=2244">aspirin (CID 2244)</A>. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 05 Oct 2011 11:22:16 -0400 tag:www.tristana.org,2011:5789A6BE-7765-4591-B5F0-F5BD36E2296A.40821.4726278588 PubChem3D added as a new layer A new layer called PubChem3D is added to PubChem to assist with interrelating diverse chemical structures with similar biological efficacies against targets. As a part of this, PubChem computes a 3-D conformer model description for records in the PubChem Compound database when possible (92% of all records when considering the parent compound of salts). A pre-computed search per compound record gives immediate access to a set of 3-D similar compounds (called "Similar Conformers") in PubChem and their respective superpositions. Systematic augmentation of PubChem resources to include a 3-D layer provides users with new capabilities to search, subset, visualize, analyze, and download data. For additional information, please visit the PubChem3D thematic series with the (BMC) Journal of Cheminformatics: <A href="http://www.jcheminf.com/series/pubchem3d">http://www.jcheminf.com/series/pubchem3d</A>. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 03 Oct 2011 15:20:56 -0400 tag:www.tristana.org,2011:4492D096-B2BB-4385-90C1-BFBE0C44D9B8.40819.6388575 PubChem growth in 2011 <P><STRONG>PubChem in 2011</STRONG> - Growth Continues </P> <P>PubChem's information content continues to increase. As of August, 2011, deposited substance records have reached 85 million, representing to over 30 million chemically unique compounds. Deposited bioassay records have reached 500 thousand, representing over 130 million experimental bioactivity results. New substance and bioassay records continue to be deposited, and the PubChem team expects that the steady growth in content and usage seen over the past 7 years will continue.</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 12 Aug 2011 16:00:51 -0400 tag:www.tristana.org,2011:EB8C0740-8A53-4CF8-8355-9ABE0637B29C.40767.666128206 AmicBase deposited substances in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22770%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.reviewscience.com/"><B>AmicBase</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 10 Aug 2011 12:27:28 -0400 tag:www.tristana.org,2011:D10CD2AD-BD7D-4D84-8E26-4B747545F559.40765.5182613079 PubChem's new data retrieving tool released PubChem is now providing an enhanced bioactivity analysis tool for retrieving bioassay data for a chemical. The tool can be accessed at http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?cid=myCID for a given CID or http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgisid=mySID for a given SID. <BR>E.g. For CID 2244, the link is: <A href="http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?cid=2244">http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?cid=2244</A>&nbsp; <BR><BR>To find out a CID associated with bioactivity data, you may follow the URL at <A href="http://www.ncbi.nlm.nih.gov/pccompound?term=pccompound_pcassay_active[filt]">http://www.ncbi.nlm.nih.gov/pccompound?term=pccompound_pcassay_active[filt]</A>. Similarly, to find out a SID associated with bioactivity data, you may follow the URL at <A href="http://www.ncbi.nlm.nih.gov/pcsubstance?term=pcsustance_pcassay_active[filt]">http://www.ncbi.nlm.nih.gov/pcsubstance?term=pcsustance_pcassay_active[filt]</A>. You may also go to the advanced search page for <A href="http://www.ncbi.nlm.nih.gov/pccompound?TabCmd=Limits">PubChem Compound database</A> or <A href="http://www.ncbi.nlm.nih.gov/pcsubsance?TabCmd=Limits">Substance database</A>, and followed by making a choice in the "BioAssays" section and clicking the "Go" button. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 08 Jun 2011 16:27:45 -0400 tag:www.tristana.org,2011:D53D014F-20C9-433E-9886-16E7C163D501.40702.6852650579 PubChem Identifier Exchange Service released PubChem released the <A href="http://pubchem.ncbi.nlm.nih.gov/idexchange/">Identifier Exchange Service</A>. For more information, click <A href="http://pubchem.ncbi.nlm.nih.gov/idexchange/idexchange-help.html">here</A>. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 27 May 2011 20:46:38 -0400 tag:www.tristana.org,2011:0E5C79E9-CE76-4644-9186-84EE1DAEF3A8.40690.8643895833 The BioAssay data specification updated The BioAssay data specification has been updated. The changes include: <OL> <LI>New units in PC-ResultType to facilitate DMPK data submission. <LI>A new element "type" in PC-AnnotatedXRef to record primary citation to advertise primary publications of the depositors and the bioassay results. <LI>A new element "type" in PC-AssayDRAttr to record experimental vs. calculated dose-response data points. </LI></OL>Please review the update at <A href="ftp://ftp.ncbi.nlm.nih.gov/pubchem/data_spec">ftp://ftp.ncbi.nlm.nih.gov/pubchem/data_spec</A>.&nbsp; http://pubchem.ncbi.nlm.nih.gov/pcnews.html pubChem Mon, 23 May 2011 18:05:32 -0400 tag:www.tristana.org,2011:54C7A83A-6BBF-48A9-B7ED-69FD2E03B2F0.40686.753081713 PubChem released two new data analysis tools PubChem released two new data analysis tools for the bioassay services - <A href="http://pubchem.ncbi.nlm.nih.gov/help.html#sActivityTarget">Target</A> and <A href="http://pubchem.ncbi.nlm.nih.gov/help.html#sActivityCompound">Compound/Substance</A> views for the BioActivity Analysis service. These new tools together with the original <A href="http://pubchem.ncbi.nlm.nih.gov/help.html#sAssayactivity">bioassay view</A> component will allow users to explore bioactivity data from molecular target, chemical structure, and biological experiment perspectives. For more information, see the <A href="http://pubchem.ncbi.nlm.nih.gov/help.html#sAssayactivity">related section</A> in the help page. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 11 Apr 2011 10:46:08 -0400 tag:www.tristana.org,2011:1AFA93B4-34EB-447F-800F-76F25C296D4F.40644.4482733565 A new depositor from Calicut University <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22719%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.universityofcalicut.info/index.php?option=com_content&amp;task=view&amp;id=191&amp;Itemid=246."><B>Immunology Lab, Department of Biotechnology, Calicut University</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 17 Mar 2011 23:01:02 -0400 tag:www.tristana.org,2011:032E3F04-AF54-4CB8-9AE0-E371422EA56E.40619.9578690625 AKos deposited substances in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22AKos%20Consulting%20%26%20Solutions%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.akosgmbh.de/"><B>AKos</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 15 Mar 2011 19:47:53 -0400 tag:www.tristana.org,2011:1855BF62-B6CB-41E8-8A81-00261E8F09D2.40617.824320625 DRSC deposited RNAi data in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Drosophila%20RNAi%20Screening%20Center%20%28DRSC%29%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcassay">RNAi screening data</A> and <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Drosophila%20RNAi%20Screening%20Center%20%28DRSC%29%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">substances</A> from the <A href="http://www.flyrnai.org/"><B>Drosophila RNAi Screening Center (DRSC) </B></A>are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 22 Feb 2011 13:07:45 -0400 tag:www.tristana.org,2011:FF3C9799-D31F-4527-A2F2-72D96B5E34C8.40596.5004621412 Substance vendor - ABI Chem in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22708%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.abichem.com/"><B>ABI Chem</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 22 Feb 2011 13:00:24 -0400 tag:www.tristana.org,2011:1F4F87FA-1DEB-4E92-A736-9E23E2FCB4B4.40596.4995182523 Two new depositors in PubChem <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Alsachim%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.alsachim.com/"><B>Alsachim</B></A> are now available in PubChem.</P> <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22UCLA%20Molecular%20Screening%20Shared%20Resource%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> and <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22UCLA%20Molecular%20Screening%20Shared%20Resource%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcassay">bioassay data</A> from <A href="http://www.mssr.ucla.edu//"><B>UCLA Molecular Screening Shared Resource</B></A> are now available in PubChem.</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 07 Feb 2011 09:36:55 -0400 tag:www.tristana.org,2011:8245E4F2-1796-4E8C-AF92-E059E0C04A52.40581.3574468403 ChEMBL assays updated All <A href="https://www.ebi.ac.uk/chembldb/">ChEMBL</A> assays have been updated and now point to substances deposited by ChEMBL requested by <A href="https://www.ebi.ac.uk/chembldb/">ChEMBL</A> and <A href="http://www.ebi.ac.uk/chebi/">ChEBI</A>. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 19 Jan 2011 11:30:13 -0400 tag:www.tristana.org,2011:36676E14-652B-4499-9ED1-4B71BF490F62.40562.4368309375 PubChem BioAssay data spec updated The PubChem BioAssay ASN.1/XML data specification has been updated to include new types of target data under PC-AssayTargetInfo and PC-ResultType. For more details, please refer to <A href="ftp://ftp.ncbi.nlm.nih.gov/pubchem/data_spec">ftp://ftp.ncbi.nlm.nih.gov/pubchem/data_spec</A>. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 13 Jan 2011 10:59:05 -0400 tag:www.tristana.org,2011:3401C390-1288-4C9B-BBD2-CF1C07D8A195.40556.4145604745 Abbott deposited substances and bioassay data in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Abbott%20Labs%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> and <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Abbott%20Labs%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcassay">bioassay data</A> from <A href="http://www.abbott.com/"><B>Abbott</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 11 Jan 2011 15:14:42 -0400 tag:www.tristana.org,2011:AF3570E5-FE5E-4709-8D94-ADAD18152120.40554.5930439236 AAA Chemistry deposited substances in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22AAA%20Chemistry%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.aaa-chem.com/"><B>AAA Chemistry</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 20 Dec 2010 17:06:32 -0400 tag:www.tristana.org,2010:E1A7207E-B77B-406C-8896-1B7F93CDA94B.40532.6703387731 Kingston Chemistry deposited substances in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Kingston%20Chemistry%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.kingstonchem.com/"><B>Kingston Chemistry</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 16 Dec 2010 13:40:39 -0400 tag:www.tristana.org,2010:0617A3E9-2B46-4B97-9E0F-8F16A1A16CF5.40528.527361331 Substance vendor Avanti Polar Lipids in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Avanti%20Polar%20Lipids%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://avantilipids.com/"><B>Avanti Polar Lipids</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 10 Nov 2010 13:10:10 -0400 tag:www.tristana.org,2010:A48D9F13-1F30-4E53-A926-7A24C1047E48.40492.5060592014 Excenen PharmaTech deposited substances in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Excenen%20Pharmatech%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.excenen.com/"><B>Excenen PharmaTech</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 01 Nov 2010 13:57:09 -0400 tag:www.tristana.org,2010:A7BD7873-FF6F-455E-945E-15ECB1459FB1.40483.5806265509 Selleck Chemicals deposited substances in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Selleck%20Chemicals%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.selleckchem.com/"><B>Selleck Chemicals</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 29 Oct 2010 11:37:39 -0400 tag:www.tristana.org,2010:66B92A13-5AF3-4BB6-988A-2E621E176EF9.40480.4830126273 Zancheng deposited structures in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Zancheng%20Functional%20Chemicals%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.zcedta.com/"><B>Zancheng Functional Chemicals</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 08 Oct 2010 13:54:41 -0400 tag:www.tristana.org,2010:663D05A9-F800-4E00-AE3A-1C1272930A64.40459.5788888079 The PubChem BioAssay FTP updated To expedite the download speed for growing number of assays in the PubChem Bioassays FTP site, we have introduced several changes that may impact all of the BioAssay FTP users. <OL> <LI>Data and description files are now partitioned and compressed as "zip" format. Each compressed zip file contains a directory with a list of BioAssay files according to the range of AID(BioAssay ID), the directory named as the AID range, and each individual data filename prefixed by the AID. For example, the file "0000001_0001000.zip" contains the compressed zip archive directory which contains individual Bioassay files. Each Bioassay file contains an AID record within the range of 1 through 1,000. <LI>The files were partitioned according to a fixed AID range of 1000. <LI>The zip file format has been natively supported on Windows, Mac OS X, Linux, Unix and other systems. There are also a number of ZIP tools and libraries available and free for your programming environments.</LI></OL> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 03 Sep 2010 15:10:25 -0400 tag:www.tristana.org,2010:E4F3B2F7-53D0-4ADA-922F-D541A5DD497E.40424.6307719213 ICCB at Harvard deposited bioassay data in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22ICCB-Longwood%2FNSRB%20Screening%20Facility%2C%20Harvard%20Medical%20School%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcassay">Bioassay data</A> from the <A href="http://iccb.med.harvard.edu/"><B>ICCB-Longwood/NSRB Screening Facility, Harvard Medical School</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 03 Sep 2010 15:08:02 -0400 tag:www.tristana.org,2010:9F091A9D-B638-4E81-BA18-FD38B7AA4CAC.40424.6289208102 The PubChem data specification updated <P>1. ASN1/XML data specification for PubChem Substance has been modified to include XRef choices for cross-link to NCBI GEO database. </P> <P>2. ASN1/XML data specification for PubChem BioAssay has been modified to Include "categorized-comment" field under PC-AssayDescription. </P>For more details, please refer to <A href="ftp://ftp.ncbi.nlm.nih.gov/pubchem/data_spec">ftp://ftp.ncbi.nlm.nih.gov/pubchem/data_spec</A> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 03 Sep 2010 15:05:10 -0400 tag:www.tristana.org,2010:D3832B3E-7FD7-4B03-BF00-128AD38B4180.40424.6224703356 Finley and King Labs deposited substances and data in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Finley%20and%20King%20Labs%2C%20Harvard%20Medical%20School%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> and <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Finley%20and%20King%20Labs%2C%20Harvard%20Medical%20School%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcassay">bioassay data</A> from <A href="http://king.med.harvard.edu/"><B>Finley and King Labs, Harvard Medical School</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 12 Jul 2010 11:48:03 -0400 tag:www.tristana.org,2010:D7410BC2-53E0-4A01-B049-128F22FDACAE.40371.4897139931 Substance vendor, Annker Organics, in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Annker%20Organics%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.annker.com/"><B>Annker Organics</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 30 Jun 2010 18:00:46 -0400 tag:www.tristana.org,2010:89F8579B-75BD-4642-BCAD-FC89B4ACD4D6.40359.749777338 Tractus deposited structures in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Tractus%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.tractuschem.com/"><B>Tractus</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 21 Jun 2010 14:44:08 -0400 tag:www.tristana.org,2010:A1E44612-A5F2-4F56-B36C-5E481C36689D.40350.6129759606 Ennopharm in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Ennopharm%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.ennopharm.com/"><B>Ennopharm</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 07 Jun 2010 12:21:25 -0400 tag:www.tristana.org,2010:71BB992D-0771-4ADA-9D15-CFEED68480B8.40336.5138510764 iThemba Pharmaceuticals in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22iThemba%20Pharmaceuticals%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.ithembapharma.com/Product_Catalogue.aspx"><B>iThemba Pharmaceuticals</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 04 Jun 2010 10:45:49 -0400 tag:www.tristana.org,2010:85B7AF6A-E7F5-4AA0-B1CC-BFB28901F84F.40333.4480076389 ChEMBL deposited bioassay data in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22ChEMBL%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcassay">Bioassay data</A> from <A href="http://www.ebi.ac.uk/chembldb/"><B>ChEMBL</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Sat, 29 May 2010 07:39:05 -0400 tag:www.tristana.org,2010:2AB8251C-58EE-4226-BA9C-35713649E641.40327.318106331 Jamson Pharmachem deposited substances in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Jamson%20Pharmachem%20Technology%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.jspchem.com/"><B>Jamson Pharmachem Technology</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 28 May 2010 11:00:55 -0400 tag:www.tristana.org,2010:ADE6566F-F671-4066-890D-DCA819BC3D3D.40326.457805544 Amatye deposited structures in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Amatye%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.amatye.com/"><B>Amatye</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 24 May 2010 12:02:21 -0400 tag:www.tristana.org,2010:FEF2D257-DB7C-4435-8E3F-28D652C50FE3.40322.5007914699 GSK deposited substances and screening data in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22GlaxoSmithKline%20%28GSK%29%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> and <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22GlaxoSmithKline%20%28GSK%29%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcassay">bioassay screening data</A> from the <A href="http://www.gsk.com/media/malaria.htm"><B>GlaxoSmithKline (GSK)</B></A> are now available in PubChem. More news can be found <A href="http://www.prnewswire.com/news-releases/gsk-and-online-communities-create-unique-alliance-to-stimulate-open-source-drug-discovery-for-malaria-94430694.html">here</A>. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 20 May 2010 18:27:02 -0400 tag:www.tristana.org,2010:1BB969C5-DED6-439D-9053-1DDA688D575A.40318.767924456 Circadian Research at UCSD deposited structures and screening data in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Circadian%20Research%2C%20Kay%20Laboratory%2C%20University%20of%20California%20at%20San%20Diego%20%28UCSD%29%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> and <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Circadian%20Research%2C%20Kay%20Laboratory%2C%20University%20of%20California%20at%20San%20Diego%20%28UCSD%29%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcassay">small molecule screening data</A> from the <A href="http://biology.ucsd.edu/labs/kay/"><B>Circadian Research, Kay Laboratory, University of California at San Diego (UCSD)</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 27 Apr 2010 14:57:16 -0400 tag:www.tristana.org,2010:4165B032-CEE2-4A57-BFE0-FDEA080C65FF.40295.6220498727 3 New substance depositors in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Golm%20Metabolome%20Database%20%28GMD%29%2C%20Max%20Planck%20Institute%20of%20Molecular%20Plant%20Physiology%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from the <A href="http://gmd.mpimp-golm.mpg.de/"><B>Golm Metabolome Database (GMD), Max Planck Institute of Molecular Plant Physiology</B></A> are now available in PubChem. <BR><BR><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Nitric%20Oxide%20Research%2C%20National%20Cancer%20Institute%20%28NCI%29%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from the <A href="http://star.ncifcrf.gov/nitricoxide/"><B>Nitric Oxide Research, National Cancer Institute (NCI) </B></A>are now available in PubChem. <BR><BR><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Creasyn%20Finechem%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from the <A href="http://www.creasyn.com/"><B>Creasyn Finechem </B></A>are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 21 Apr 2010 18:13:22 -0400 tag:www.tristana.org,2010:FBE851BC-EE8E-4A90-A269-C17CBEFEF399.40289.7571659722 ICCB-Longwood of Harvard Medical School deposited structures in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22ICCB-Longwood%2FNSRB%20Screening%20Facility%2C%20Harvard%20Medical%20School%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from the <A href="http://iccb.med.harvard.edu/"><B>ICCB-Longwood/NSRB Screening Facility, Harvard Medical School</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 13 Apr 2010 22:28:44 -0400 tag:www.tristana.org,2010:3FEB62CC-BA3A-4BA7-BF2E-2E87E67D8B65.40281.9356572106 Nature Communications deposited structures in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Nature%20Communications%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from the <A href="http://www.nature.com/ncomms/"><B>Nature Communications </B></A>are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 13 Apr 2010 22:27:06 -0400 tag:www.tristana.org,2010:279B6069-6698-4EFB-91D2-FD8BC10F6C03.40281.9344270833 Tokyo Chemical Industry Deposited Structures <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22TCI (Tokyo Chemical Industry)%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from <A href="http://www.tciamerica.com/"><B>TCI (Tokyo Chemical Industry)</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 05 Mar 2010 09:32:49 -0400 tag:www.tristana.org,2010:0BA16489-E6AA-4E61-A6F8-5C65E1C17CB8.40259.3960013773 Molport deposited structures <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22MolPort%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance">Structures</A> from the <A href="http://www.molport.com/"><B>molport</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 19 Feb 2010 12:50:10 -0400 tag:www.tristana.org,2010:E5567D4B-82A3-41A5-8F02-3F7070527452.40228.4898360764 MIC Scientific deposited structures in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22MIC%20Scientific%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.michemical.com/"><B><FONT color=#0056cc>MIC Scientific</FONT></B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 15 Dec 2009 12:09:36 -0400 tag:www.tristana.org,2009:7A6D9A39-A72F-470E-80A8-315DDBF49D3B.40162.4639351852 ChEBI release 62 in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22ChEBI%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.ebi.ac.uk/chebi/init.do"><B><FONT color=#0056cc>ChEBI</FONT></B></A> are now updated with <A href="http://www.ebi.ac.uk/chebi/newsForward.do#CHEBI Release 62"><FONT color=#0056cc>ChEBI release 62</FONT></A>. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 23 Nov 2009 15:09:25 -0400 tag:www.tristana.org,2009:221A8A2F-AD0D-4236-88D8-623A39A803F6.40140.5891428356 Deposition Gateway Upgrade <STRONG><FONT size=2><FONT size=3>Notice: Upcoming Database Upgrade</FONT><BR></FONT></STRONG>The PubChem Deposition Gateway will be unavailable this coming Monday (2009-11-23) from 8:00 AM EST to 2:00 PM EST, due to a required database server upgrade. The actual downtime may be shorter than this window, but it should not exceed it. Please contact NCBI with concerns: <A href="mailto:info@ncbi.nlm.nih.gov">info@ncbi.nlm.nih.gov</A>. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 18 Nov 2009 18:00:16 -0400 tag:www.tristana.org,2009:4E3D8E38-ED92-41D0-AB7D-E968A10F5544.40135.7076390393 Upcoming Systems Maintenance <STRONG><FONT size=2><FONT size=3>Notice: Upcoming Systems Maintenance</FONT><BR></FONT></STRONG>PubChem may experience a partial outage of services this weekend, beginning Friday (2009-11-13) at 3:00 PM EST through Saturday (2009-11-14) at 8:00 PM EST, due to upgrades to the power grid at NCBI. During this time, most PubChem services will be operational but may be intermittently slow. The PubChem Deposition Gateway will be unavailable. Please contact NCBI with concerns: <A href="mailto:info@ncbi.nlm.nih.gov">info@ncbi.nlm.nih.gov</A>. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 13 Nov 2009 11:47:43 -0400 tag:www.tristana.org,2009:DD8AAFEF-56C2-4ABB-8D0A-2E4FFF229941.40130.4488280671 PubChem Entrez added "Selected Records" panel PubChem Entrez displays now include a "Selected Records" panel to help users discover informative annotations and subsets among search results. For example, following a keyword search of PubChem Compound for "<A href="http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pccompound&amp;Cmd=DetailsSearch&amp;Term=aspirin">aspirin</A>", the "Selected Compounds" panel includes a line saying "Protein 3D Structures, Compound Count: 4." This indicates that 4 of the 85 compound records retrieved by the "aspirin" search were derived from Protein 3D structures. Clicking on "4" shows which 4 out of the 85 compounds were observed binding to proteins. Clicking on "Protein 3D Structures" shows the 20 experimental protein 3D structures observed to bind these compounds. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 30 Oct 2009 16:11:47 -0400 tag:www.tristana.org,2009:65074003-D485-46A7-94AE-0B45ACEDED95.40116.5876688194 Ganolix deposited structures <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Ganolix%20LifeScience%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from the <A href="http://www.ganolix-pharm.com/"><B><FONT color=#0056cc>Ganolix</FONT></B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 30 Oct 2009 14:06:11 -0400 tag:www.tristana.org,2009:C360A0C8-1C57-4126-B0CF-E1E4A6C50648.40116.5867077894 University of Kansas Specialized Chemistry Center deposited substances in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Molecular%20Libraries%20Program%2C%20Specialized%20Chemistry%20Center%2C%20University%20of%20Kansas%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from the <A href="http://www.scc.ku.edu/"><B><FONT color=#0056cc>Molecular Libraries Program, University of Kansas Specialized Chemistry Center</FONT></B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 30 Sep 2009 12:27:24 -0400 tag:www.tristana.org,2009:E2681817-0264-44E7-B0F6-2A7AA651E477.40086.5171027083 siRNA screen data from GNF in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22The%20Genomics%20Institute%20of%20the%20Novartis%20Research%20Foundation%20%28GNF%29%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcassay"><FONT color=#0056cc>A genome-wide siRNA screen for modifiers of the circadian clock in human cells</FONT></A> from <A href="http://biogps.gnf.org/circadian/"><FONT color=#0056cc><B>the Genomics Institute of the Novartis Research Foundation</B> (GNF)</FONT></A> is now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html Pubchem Thu, 17 Sep 2009 17:53:03 -0400 tag:www.tristana.org,2009:974E1C0A-37E0-44D6-A4FE-BA0B0045A490.40073.7436639352 Biological Magnetic Resonance Data Bank Deposited Structures in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Biological%20Magnetic%20Resonance%20Data%20Bank%20%28BMRB%29%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.bmrb.wisc.edu/metabolomics/"><FONT color=#0056cc><B>Biological Magnetic Resonance Data Bank</B> (BMRB)</FONT></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 02 Sep 2009 14:36:39 -0400 tag:www.tristana.org,2009:B6525A7B-B800-45F2-963F-223E7C8D7DAF.40058.6033821528 Tyger Scientific and PennChem-GAM deposited structures in PubChem <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Tyger%20Scientific%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.tygersci.com/"><B><FONT color=#0056cc>Tyger Scientific</FONT></B></A> are now available in PubChem.</P> <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22PennChem-GAM%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <B>PennChem-GAM</B> are now available in PubChem.</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 05 Aug 2009 12:30:24 -0400 tag:www.tristana.org,2009:1A2B38BB-2E69-4A1D-9C3E-DD9FB93A23C6.40029.4807673264 Substance vendor IS Chemical Technology in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22IS%20Chemical%20Technology%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.ispharm.com/"><B><FONT color=#0056cc>IS Chemical Technology</FONT></B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 30 Jun 2009 15:24:40 -0400 tag:www.tristana.org,2009:3D4149D5-9C90-496E-A15F-280E051EF498.39994.6404472801 PDBbind data in PubChem <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Shanghai%20Institute%20of%20Organic%20Chemistry%22%5Bsourcename%5D&amp;cmd=search&amp;db=pcassay"><FONT color=#0056cc>Protein-ligand binding affinity data </FONT></A>from the <A href="http://www.pdbbind.org.cn/"><FONT color=#0056cc>PDBbind database</FONT></A> have now been deposited into PubChem BioAssay database by the <A href="http://www.sioc.ac.cn/esioc/1.htm"><B><FONT color=#0056cc>Shanghai Institute of Organic Chemistry</FONT></B></A>.</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 12 Jun 2009 11:02:50 -0400 tag:www.tristana.org,2009:1C225251-B3E9-481E-A9A7-9F85CA572D57.39976.4405540046 PubChem - One of the Best Free Reference Web Sites 2009 The <A href="http://www.ala.org/"><FONT color=#0056cc><B>ALA</B> (American Library Association)</FONT></A> selected <A href="http://pubchem.ncbi.nlm.nih.gov/"><FONT color=#0056cc>PubChem</FONT></A> as one of the <A href="http://www.ala.org/ala/mgrps/divs/rusa/sections/mars/marspubs/marsbestfreewebsites/marsbestfree2009.cfm"><FONT color=#0056cc>Best Free Reference Web Sites 2009</FONT></A>. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 12 Jun 2009 07:58:07 -0400 tag:www.tristana.org,2009:AAB101A9-A676-4434-A70A-2A6013317555.39980.7525032755 ZINC updated in PubChem <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22ZINC%22%5Bsourcename%5D&cmd=search&db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://zinc.docking.org/"><B><FONT color=#0056cc>ZINC</FONT></B></A> are updated in PubChem.</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 09 Jun 2009 10:51:53 -0400 tag:www.tristana.org,2009:EF093E82-AE20-456B-BDAA-875802A6EEFC.39973.4490132986 Vitas-M deposited structures in PubChem <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Vitas-M%20Laboratory%22%5Bsourcename%5D&cmd=search&db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.vitasmlab.com/"><B><FONT color=#0056cc>Vitas-M Laboratory</FONT></B></A> are now available in PubChem.</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 04 Jun 2009 06:50:14 -0400 tag:www.tristana.org,2009:E138BE10-3B06-4B39-A782-D7CBB4BDE66D.39968.2786203588 Two Substance Vendors in PubChem <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Shanghai%20Sinofluoro%20Scientific%20Company%22%5Bsourcename%5D&cmd=search&db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.sinofluoro.com/"><B><FONT color=#0056cc>Shanghai Sinofluoro Scientific Company</FONT></B></A> are now available in PubChem.</P> <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Alinda%20Chemical%22%5Bsourcename%5D&cmd=search&db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.alinda.ru/bases_en.html"><B><FONT color=#0056cc>Alinda Chemical</FONT></B></A> are now available in PubChem.</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 21 May 2009 08:56:38 -0400 tag:www.tristana.org,2009:D455D0B8-0238-435E-B69A-54F0D51E5D9D.39954.3712825579 Max Planck Institute of Molecular Physiology deposited structures and bioassay data in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Chemical%20Biology%20Department%2C%20Max%20Planck%20Institute%20of%20Molecular%20Physiology%22%5Bsourcename%5D&cmd=search&db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> and <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Chemical%20Biology%20Department%2C%20Max%20Planck%20Institute%20of%20Molecular%20Physiology%22%5Bsourcename%5D&cmd=search&db=pcassay"><FONT color=#0056cc>small molecule screening data</FONT></A> from <A href="http://www.mpi-dortmund.mpg.de/english/Start/Willkommen/index.html"><B><FONT color=#0056cc>Chemical Biology Department, Max Planck Institute of Molecular Physiology</FONT></B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 24 Apr 2009 11:16:18 -0400 tag:www.tristana.org,2009:62166DD7-95D9-4D43-91F5-48788D1D3D4C.39927.4686100579 Novo|seek deposited structures in PubChem <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22NovoSeek%22%5Bsourcename%5D&cmd=search&db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.novoseek.com/"><B><FONT color=#0056cc>novo|seek</FONT></B></A> are now available in PubChem. Novo|seek is a search engine for biomedical literature in Medline and US Grants. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 02 Apr 2009 16:50:39 -0400 tag:www.tristana.org,2009:B84DEA3F-3D21-4E5E-82E1-024B66AECDF4.39905.6975891667 March 30, 2009 <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Johns%20Hopkins%20Ion%20Channel%20Center%22%5Bsourcename%5D&cmd=search&db=pcassay">Small molecule screening data</A> from <A href="http://www.jhicc.org/"><B>Johns Hopkins Ion Channel Center</B></A> are now available in PubChem.  </P> <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Broad%20Institute%22%5Bsourcename%5D&cmd=search&db=pcassay">Small molecule screening data</A> from <A href="http://www.broad.mit.edu/"><B>Broad Institute</B></A> are now available in PubChem. </P> <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22NINDS%20Approved%20Drug%20Screening%20Program%22%5Bsourcename%5D&cmd=search&db=pcsubstance">Structures</A> and <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22NINDS%20Approved%20Drug%20Screening%20Program%22%5Bsourcename%5D&cmd=search&db=pcassay">small molecule screening data</A> from <A href="http://www.ninds.nih.gov/"><B>NINDS Approved Drug Screening Program</B></A> are now available in PubChem. </P> <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Southern%20Research%20Specialized%20Biocontainment%20Screening%20Center%22%5Bsourcename%5D&cmd=search&db=pcassay">Small molecule screening data</A> from <A href="http://srsbsc.southernresearch.org/"><B>Southern Research Specialized Biocontainment Screening Center</B></A> are now available in PubChem. </P> <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Thermo%20Scientific%20Dharmacon%20RNAi%20Technologies%22%5Bsourcename%5D&cmd=search&db=pcsubstance">Substances</A> and <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Thermo%20Scientific%20Dharmacon%20RNAi%20Technologies%22%5Bsourcename%5D&cmd=search&db=pcassay">RNAi screening data</A> from <A href="http://www.dharmacon.com/HomePage.aspx?WT.mc_id=dharmacon_homepage_thermo"><B>RNAi Global Initiative / Thermo Scientific Dharmacon RNAi Technologies </B></A>are now available in PubChem. </P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 30 Mar 2009 14:56:06 -0400 tag:www.tristana.org,2009:749F06D3-9E73-4BC8-945C-4E0F94065716.39902.6141206018 February 25, 2009 <A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Nature%20Chemistry%22%5Bsourcename%5D&cmd=search&db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.nature.com/nchem/"><B><FONT color=#0056cc>Nature Chemistry</FONT></B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 25 Feb 2009 11:52:05 -0400 tag:www.tristana.org,2009:C418FBB2-1DE9-4EEB-92DF-DA84489EFC23.39869.4521726505 February 13, 2009 <P><A href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Thermo%20Scientific%20Dharmacon%20RNAi%20Technologies%22%5Bsourcename%5D&cmd=search&db=pcsubstance"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.thermo.com/dharmacon/"><B><FONT color=#0056cc>Thermo Scientific Dharmacon RNAi Technologies</FONT></B></A> are now available in PubChem.</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 13 Feb 2009 12:02:49 -0400 tag:www.tristana.org,2009:110C8683-394A-4F21-8E0D-A1C74AF2A877.39857.4471512731 February 3,2009 <P><A href="http://pubchem.ncbi.nlm.nih.gov/release3d.html"><FONT color=#0056cc>PubChem3D</FONT></A> is released consisting of a single theoretical 3D conformer per compound record and includes a new similarity relationship (Similar Conformers).</P> <P><A href="http://pubchem.ncbi.nlm.nih.gov/help.html#xXLogP"><FONT color=#0056cc>XLogP</FONT></A> is now updated to version 3.0 of the algorithm.  <A href="http://pubchem.ncbi.nlm.nih.gov/help.html#iInChI"><FONT color=#0056cc>InChI and InChIKey</FONT></A> are now updated to use the <A href="http://www.iupac.org/inchi/release102final.html"><FONT color=#0056cc>version 1.0.2 standard</FONT></A>. </P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 03 Feb 2009 21:40:03 -0400 tag:www.tristana.org,2009:6BE5B593-418E-447F-B23B-3387F451F9FF.39847.8597664236 November 28, 2008 <A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22Vanderbilt%20University%20Medical%20Center%22[sourcename]"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.mc.vanderbilt.edu/"><B><FONT color=#0056cc>Vanderbilt University Medical Center</FONT></B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 28 Nov 2008 10:09:48 -0400 tag:www.tristana.org,2008:0EA7D602-A0F0-482C-B074-410A0614D3E9.39780.3811992361 November 26, 2008 <A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcassay&term=%22Ambit%20Biosciences%22[sourcename]"><FONT color=#0056cc>BioAssay data</FONT></A>, Kinase Inhibitor Selectivity Profiling Assay, from <A href="http://www.ambitbio.com/"><B><FONT color=#0056cc>Ambit Biosciences</FONT></B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 26 Nov 2008 07:56:20 -0400 tag:www.tristana.org,2008:0986E2DA-2642-4ED4-A3B5-407F1632F1FC.39778.2886084028 November 20, 2008 The PubChem <A href="http://pubchem.ncbi.nlm.nih.gov/score_matrix/"><FONT color=#0056cc>Score Matrix Service</FONT></A>, through which one can download similarity scores for selected lists of CIDs, is now released. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 20 Nov 2008 08:24:23 -0400 tag:www.tristana.org,2008:DBF36BCB-B245-4D54-AC95-957019D3AAE5.39772.3078661343 November 7, 2008 <A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcassay&term=%22IUPHAR-DB%22[sourcename]"><FONT color=#0056cc>BioAssay data</FONT></A> from <A href="http://www.iuphar-db.org/"><FONT color=#0056cc>The International Union of Pharmacology (<B>IUPHAR-DB</B>)</FONT></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 07 Nov 2008 18:04:57 -0400 tag:www.tristana.org,2008:F644C163-363D-4EA0-AA74-95FFF8B71622.39759.7112526273 November 5, 2008 <A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22EMD%20Biosciences%22[sourcename]"><FONT face=Verdana color=#0056cc>Structures</FONT></A> from <A href="http://www.emdbiosciences.com/"><B><FONT face=Verdana color=#0056cc>EMD Biosciences</FONT></B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 05 Nov 2008 11:56:03 -0400 tag:www.tristana.org,2008:B08B48B4-01DD-42F3-A775-CCBF564344B5.39757.4551476736 October 27, 2008 <A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22ChemSynthesis%22[sourcename]"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.chemsynthesis.com/"><B><FONT color=#0056cc>ChemSynthesis</FONT></B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 27 Oct 2008 10:22:54 -0400 tag:www.tristana.org,2008:8BB88E49-D243-42BE-B0C5-960DD5106848.39748.4316327431 October 20, 2008 <P><A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22PENN-ABS%22[sourcename]"><FONT color=#0056cc>Structures</FONT></A> from <B>PENN-ABS</B> are now available in PubChem.</P> <P><A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22IUPHAR-DB%22[sourcename]"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.iuphar-db.org/"><B><FONT color=#0056cc>IUPHAR-DB</FONT></B></A> are now available in PubChem.</P> <P><A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22True20%PharmaChem%22[sourcename]"><FONT color=#0056cc>Structures</FONT></A> from <A href="http://www.truepharmachem.com/"><B><FONT color=#0056cc>True PharmaChem</FONT></B></A> are now available in PubChem.</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 20 Oct 2008 16:48:11 -0400 tag:www.tristana.org,2008:B2315195-AD01-47CA-A484-9EECB38E205C.39741.6994039352 September 29, 2008 <P><A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22Comparative%20Toxicogenomics%20Database%22[sourcename]">Structures</A> from <A href="http://ctd.mdibl.org/"><B>Comparative Toxicogenomics Database</B></A> are now available in PubChem.</P> <P><A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22HDH%20Pharma%22[sourcename]">Structures</A> from <A href="http://www.hdhpharma.com/"><B>HDH Pharma</B></A> are now available in PubChem.</P> <P><A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22Johns%20Hopkins%20Ion%20Channel%20Center%22[sourcename]">Structures</A> from <B>Johns Hopkins Ion Channel Center</B> are now available in PubChem.</P> <P><A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22Biosynth%22[sourcename]">Structures</A> from <B>Biosynth</B> are now available in PubChem.</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 29 Sep 2008 13:23:25 -0400 tag:www.tristana.org,2008:716AC0EF-1D07-4712-9CE3-219214579DC4.39720.5506661458 September 18, 2008 PubChem <A href="http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap_help.html"><FONT face=Verdana color=#0056cc>PUG SOAP</FONT></A> is officially released. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 18 Sep 2008 14:39:10 -0400 tag:www.tristana.org,2008:E1E4BCDA-A9C8-4F3B-8E8A-F7F0B13EE908.39709.5502840162 September 18, 2008 <P>RSS and Atom feed are available for PubChem announcements.</P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 18 Sep 2008 14:38:54 -0400 tag:www.tristana.org,2008:67963A0A-1C12-402E-AFCD-BA738C6D1F72.39708.6584936806 September 11, 2008 <A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22MP%20Organic%20%26%20Rare%20Chemicals%22[sourcename]">Structures</A> from <A href="http://www.mpbio.com/landing.php"><B>MP Organic & Rare Chemicals</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Thu, 11 Sep 2008 15:39:32 -0400 tag:www.tristana.org,2008:89DA66C9-2DED-406D-916A-1ADA8349A7A3.39708.650895463 September 10, 2008 <A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=NextBio[sourcename]">Structures</A> from <A href="http://www.nextbio.com/b/home/home.nb"><B>NextBio</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Wed, 10 Sep 2008 15:39:28 -0400 tag:www.tristana.org,2008:F506FB2F-A4E4-420F-82BD-396393966A4C.39708.6504766204 September 8, 2008 <A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=Isoprenoids[sourcename]">Structures</A> from <A href="http://isoprenoids.com/"><B>Isoprenoids</B></A> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Mon, 08 Sep 2008 15:39:25 -0400 tag:www.tristana.org,2008:E00E5B98-DEBA-4A35-A692-F417C40217B8.39708.6500827315 August 15, 2008 <P><A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22Ambit%20Biosciences%22[sourcename]">Structures</A> from <A href="http://www.ambitbio.com/"><B>Ambit Biosciences</B></A> are now available in PubChem.</P> <P><A href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=%22Paul%20Baures%22[sourcename]">Structures</A> from <B>Paul Baures</B> are now available in PubChem. </P> http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Fri, 15 Aug 2008 15:43:00 -0400 tag:www.tristana.org,2008:14EA6CF9-66C0-4FBC-ABCF-6C861D6981D2.39708.649235625 July 15, 2008 <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pcsubstance&term=LeadScope[sourcename]"> Structures</a> from <a href="http://www.leadscope.com/"> <b>LeadScope</b></a> are now updated in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 15 Jul 2008 15:39:07 -0400 3B786FD2-34B4-445A-9447-A229A2BF0835 July 1, 2008 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=%22Hangzhou%20Trylead%20Chemical%20Technology%22%5Bsourcename%5D&cmd=search&db=pcsubstance"> Structures</a> from the <a href="http://www.trylead-chem.com/"><b>Hangzhou Trylead Chemical Technology</b></a> are now available in PubChem. http://pubchem.ncbi.nlm.nih.gov/pcnews.html PubChem Tue, 01 Jul 2008 15:39:16 -0400 AF00F46B-D284-4CA5-9E70-7DA04337397A