Shotgun Assembly Sequences: Genome (WGS) and Transcriptome (TSA)

Whole Genome Shotgun (WGS) sequencing projects are incomplete genomes or incomplete chromosomes that are being sequenced by a whole genome shotgun strategy. The pieces of a WGS project are the contigs (overlapping reads), and they do not include any gaps. WGS projects may be annotated, but annotation is not required.

Transcriptome Shotgun Assembly (TSA) sequences are computationally assembled sequences from primary data such as ESTs, traces and Next Generation Sequencing Technologies.

Please consult WGS Submission or TSA Submission pages for more details.

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6,085 projects found. Show projects on page.

#	Prefix	Div	BioProject	BioSample	Organism	Contigs			Scaffolds			Complete	Update Date	Create Date
#	Prefix	Div	BioProject	BioSample	Organism	#	Mbases	Annot	#	Mbases	Annot	Complete	Update Date	Create Date
1	AAAA02	PLN	PRJNA361		Oryza sativa Indica Group	50,231	410.7		3,095	769.7	Y		2011-02-25	2004-10-21
2	AAAB01	INV	PRJNA1438		Anopheles gambiae str. PEST	69,724	328.9	Y	5	230.5			2011-05-19	2002-03-22
3	AAAC01	BCT	PRJNA299		Bacillus anthracis str. A2012	1	5.1						2007-01-17	2002-05-09
4	AAAK03	BCT	PRJNA71		Enterococcus faecium DO	163	2.8	Y					2007-01-17	2004-06-07
5	AAAL02	BCT	PRJNA260		Xylella fastidiosa Dixon	32	2.6	Y					2007-01-17	2005-07-26
6	AAAM03	BCT	PRJNA261		Xylella fastidiosa subsp. sandyi Ann-1	219	5.1	Y					2007-01-17	2005-08-03
7	AAAP01	BCT	PRJNA6		Magnetospirillum magnetotacticum MS-1	3,880	9.2						2007-01-17	2002-06-26
8	AABC05	BCT	PRJNA239		Ferroplasma acidarmanus fer1	18	1.9		1	1.9			2007-02-13	2007-02-09
9	AABF01	BCT	PRJNA1419		Fusobacterium nucleatum subsp. vincentii ATCC 49256	302	2.1	Y					2007-01-17	2003-01-24
10	AABL01	INV	PRJNA1436		Plasmodium yoelii yoelii	5,687	23.1	Y					2007-01-17	2002-10-03
11	AABM02	BCT	PRJNA321		Bifidobacterium longum DJO10A	120	2.4						2007-01-17	2003-03-26
12	AABR06	ROD	PRJNA10629		Rattus norvegicus	112,651	2,573.3		8,581	5,681.5			2012-03-16	2012-03-13
13	AABS01	INV	PRJNA166		Ciona intestinalis	2,501	116.7						2007-01-17	2002-12-12
14	AABT01	PLN	PRJNA187		Aspergillus terreus ATCC 20542	175	.1						2007-01-17	2002-12-19
15	AABU01	INV	PRJNA13812		Drosophila melanogaster	2,783	137.6	Y	2,473	29.1	Y		2007-11-20	2002-12-18
16	AABW01	BCT	PRJNA1414		Rickettsia sibirica 246	1	1.3	Y					2007-01-17	2003-02-06
17	AABX02	PLN	PRJNA13841		Neurospora crassa OR74A	251	39.2	Y					2007-09-10	2007-09-10
18	AABY01	PLN	PRJNA1440		Saccharomyces paradoxus NRRL Y-17217	832	11.9						2007-01-17	2003-03-28
19	AABZ01	PLN	PRJNA374		Saccharomyces mikatae IFO 1815	1,648	11.5						2007-01-17	2003-03-28
20	AACA01	PLN	PRJNA1441		Saccharomyces bayanus MCYC 623	1,098	11.5						2007-01-17	2003-03-28
21	AACB02	INV	PRJNA1439		Giardia lamblia ATCC 50803	306	11.2	Y	92	11.2			2010-03-10	2007-09-24
22	AACC02	PRI	PRJNA10793		Homo sapiens	171	137.7	Y	20	123.8	Y		2007-01-17	2004-07-19
23	AACD01	PLN	PRJNA130		Aspergillus nidulans FGSC A4	248	30.1	Y	17	29.7			2007-01-17	2003-04-07
24	AACE03	PLN	PRJNA1445		Lachancea kluyveri NRRL Y-12651	36	11.5		8	11.3			2011-05-12	2011-05-12
25	AACF01	PLN	PRJNA1444		Naumovozyma castellii NRRL Y-12630	570	11.2						2009-01-23	2003-05-22
26	AACG02	PLN	PRJNA1443		Saccharomyces bayanus 623-6C	586	11.9						2009-01-23	2005-10-14
27	AACH01	PLN	PRJNA9601		Saccharomyces mikatae IFO 1815	2,808	10.8						2009-01-23	2003-05-22
28	AACI02	PLN	PRJNA1442		Saccharomyces kudriavzevii IFO 1802	2,029	11.2						2009-01-23	2005-10-14
29	AACI03	PLN	PRJNA1442		Saccharomyces kudriavzevii IFO 1802	2,055	11.2	Y	2,054	11.2			2012-08-22	2012-08-21
30	AACK01	BCT	PRJNA198		Actinobacillus pleuropneumoniae serovar 1 str. 4074	140	2.3						2007-01-17	2003-04-21
31	AACM02	PLN	PRJNA13839		Gibberella zeae PH-1	435	36.3		37	72.9			2011-11-25	2007-04-11
32	AACN01	MAM	PRJNA10628		Canis lupus familiaris	1,089,636	1,517.5						2007-01-17	2003-09-27
33	AACP01	PLN	PRJNA1446		Ustilago maydis 521	278	19.8	Y					2007-03-05	2003-07-29
34	AACQ01	PLN	PRJNA10701		Candida albicans SC5314	413	27.6	Y					2007-01-17	2004-04-21
35	AACR01	BCT	PRJNA441		Pasteuria nishizawae str. North American	25	.0						2007-01-17	2003-07-23
36	AACS02	PLN	PRJNA1447		Coprinopsis cinerea okayama7#130	68	36.2	Y					2010-06-16	2010-06-16
37	AACT01	INV	PRJNA1435		Ciona savignyi	66,800	401.4		3,447	547.7			2007-01-17	2003-10-24
38	AACU03	PLN	PRJNA13840		Magnaporthe oryzae 70-15	219	40.9		53	41.0	Y		2012-05-10	2011-09-19
39	AACV01	PLN	PRJNA13139		Oryza sativa Japonica Group	35,047	374.2		1,436	717.2	Y		2009-02-05	2004-10-21
40	AACW02	PLN	PRJNA13066		Rhizopus delemar RA 99-880	391	45.3		83	46.1	Y		2012-04-18	2005-09-19
41	AACX01	BCT	PRJNA19251		Burkholderia thailandensis E264	44	6.3		2	6.4			2007-04-11	2007-04-10
42	AACY02	ENV	PRJNA13694		marine metagenome	4,124,495	4,468.5		3,087,206	4,552.9	Y		2007-04-08	1900-01-01
43	AACZ03	PRI	PRJNA13184		Pan troglodytes	192,898	2,839.9		11,220	6,208.6			2011-03-25	2010-01-21
44	AADA01	PRI	PRJNA13184		Pan troglodytes	361,864	2,733.9						2007-01-17	2003-12-05
45	AADB02	PRI	PRJNA1431		Homo sapiens	401,931	3,087.3		14,095	5,666.9	Y		2007-01-17	2005-08-25
46	AADC01	PRI	PRJNA1431		Homo sapiens	169,156	2,656.0		24	2,908.7			2007-01-17	2004-02-04
47	AADD01	PRI	PRJNA1431		Homo sapiens	211,493	2,695.6		24	2,816.1			2007-01-17	2004-02-03
48	AADE01	INV	PRJNA10626		Drosophila pseudoobscura pseudoobscura	17,507	171.3		4,896	152.7	Y		2012-09-19	2003-12-24
49	AADG06	INV	PRJNA10625		Apis mellifera	16,501	229.1		5,660	453.7			2011-01-20	2010-11-30
50	AADK01	INV	PRJNA13125		Bombyx mori	66,482	393.4		16,462	343.7			2007-01-17	2004-10-12
51	AADL01	ENV	PRJNA13696		mine drainage metagenome	2,534	13.0		908	9.8	Y		2008-09-25	2004-02-01
52	AADM01	PLN	PRJNA10734		Lachancea waltii NCYC 2644	713	10.9						2007-01-17	2004-03-15
53	AADN03	VRT	PRJNA13342		Gallus gallus	27,102	942.3		2,254	1,020.1			2011-11-22	2011-11-21
54	AADQ01	BCT	PRJNA10753		Listeria monocytogenes serotype 1/2a str. F6854	133	3.0	Y					2007-01-17	2004-05-04
55	AADR01	BCT	PRJNA10752		Listeria monocytogenes serotype 4b str. H7858	181	3.0	Y					2007-01-17	2004-05-04
56	AADS01	PLN	PRJNA135		Phanerochaete chrysosporium RP-78	1,323	29.8						2007-01-17	2004-04-29
57	AADV02	BCT	PRJNA10651		Crocosphaera watsonii WH 8501	323	6.2	Y					2007-01-17	2005-06-16
58	AAEC03	PLN	PRJNA12883		Coccidioides immitis RS	11	29.0		7	29.0			2012-06-26	2009-10-23
59	AAEE01	INV	PRJNA144		Cryptosporidium parvum Iowa II	18	9.1	Y	8	9.1			2007-02-26	2004-04-05
60	AAEG01	PLN	PRJNA13674		Saccharomyces cerevisiae RM11-1a	115	11.7		17	11.7	Y		2008-06-16	2005-03-16
61	AAEK01	BCT	PRJNA10788		Bacillus cereus G9241	207	5.9	Y					2007-01-17	2004-05-21
62	AAEL01	INV	PRJNA13200		Cryptosporidium hominis	1,422	8.7	Y					2007-01-17	2004-10-27
63	AAEN01	BCT	PRJNA10796		Bacillus anthracis str. CNEVA-9066	30	5.5						2007-01-17	2004-06-03
64	AAEO01	BCT	PRJNA10795		Bacillus anthracis str. A1055	42	5.4						2007-01-17	2004-06-03
65	AAEP01	BCT	PRJNA10797		Bacillus anthracis str. Vollum	52	5.5						2007-01-17	2004-06-03
66	AAEQ01	BCT	PRJNA324		Bacillus anthracis str. Kruger B	64	5.5						2007-01-17	2004-06-04
67	AAER01	BCT	PRJNA337		Bacillus anthracis str. Western North America USA6153	44	5.5						2007-01-17	2004-06-04
68	AAES01	BCT	PRJNA10799		Bacillus anthracis str. Australia 94	49	5.5						2007-01-17	2004-06-04
69	AAEU02	INV	PRJNA12366		Drosophila yakuba	13,439	162.6		8,122	165.7	Y		2008-07-11	2006-06-27
70	AAEW02	BCT	PRJNA12551		Desulfuromonas acetoxidans DSM 684	51	3.8	Y					2007-01-17	2006-05-12
71	AAEX03	MAM	PRJNA13179		Canis lupus familiaris	27,105	2,392.7		1,081	4,714.5			2011-11-02	2011-10-24
72	AAEY01	PLN	PRJNA12386		Cryptococcus neoformans var. neoformans B-3501A	70	18.5	Y	14	19.7			2007-01-17	2004-07-13
73	AAFA03	BCT	PRJNA12417		Streptococcus suis 89/1591	82	2.1	Y					2009-02-20	2009-02-20
74	AAFB02	INV	PRJNA142		Entamoeba histolytica HM-1:IMSS	2,173	20.8		1,529	20.8	Y		2010-06-28	2007-03-07
75	AAFC03	MAM	PRJNA12555		Bos taurus	131,728	3,247.5		6,875	5,601.5			2011-11-02	2006-08-11
76	AAFD02	PLN	PRJNA191		Thalassiosira pseudonana CCMP1335	113	29.5		62	29.6	Y		2009-01-16	2008-10-15
77	AAFI02	INV	PRJNA201		Dictyostelium discoideum AX4	262	34.2	Y	42	34.1			2009-09-02	2009-08-18
78	AAFJ01	BCT	PRJNA12518		Campylobacter upsaliensis RM3195	20	1.8	Y					2007-01-17	2005-01-04
79	AAFL01	BCT	PRJNA12516		Campylobacter coli RM2228	38	1.9	Y					2007-01-17	2005-01-04
80	AAFM01	PLN	PRJNA12729		Meyerozyma guilliermondii ATCC 6260	71	10.6		9	10.6	Y		2009-06-10	2005-03-17
81	AAFN02	PLN	PRJNA13675		Candida tropicalis MYA-3404	128	14.6		24	14.6	Y		2010-06-15	2009-06-16
82	AAFO01	PLN	PRJNA16373		Candida albicans WO-1	86	14.4		22	14.5	Y		2009-06-10	2006-03-28
83	AAFP01	PLN	PRJNA13691		Cryptococcus gattii R265	701	17.2		26	17.5			2007-01-17	2005-03-17
84	AAFR03	MAM	PRJNA12561		Monodelphis domestica	72,811	3,501.6		1,127	3,569.4			2007-05-18	2006-01-12
85	AAFS01	INV	PRJNA13195		Drosophila pseudoobscura pseudoobscura	12,430	157.5		2,032	161.2			2008-09-22	2004-11-19
86	AAFT01	PLN	PRJNA12753		Clavispora lusitaniae ATCC 42720	88	12.1		9	12.1	Y		2009-06-10	2005-03-16
87	AAFU01	PLN	PRJNA12795		Chaetomium globosum CBS 148.51	1,245	34.3		37	34.9	Y		2007-01-17	2005-03-14
88	AAFV01	BCT	PRJNA13286		Streptococcus pyogenes M49 591	295	1.3	Y					2007-01-17	2004-12-23
89	AAFW02	PLN	PRJNA13304		Saccharomyces cerevisiae YJM789	258	12.0	Y					2007-08-03	2007-07-13
90	AAFX01	ENV	PRJNA13699		metagenome sequence	139,340	144.9						2007-01-17	2005-02-19
91	AAFY01	ENV	PRJNA32357		metagenome sequence	28,151	29.8						2008-10-30	2005-02-23
92	AAFZ01	ENV	PRJNA32355		metagenome sequence	29,934	30.9						2008-10-30	2005-02-23
93	AAGA01	ENV	PRJNA32359		metagenome sequence	26,232	28.9						2008-10-30	2005-02-23
94	AAGB01	BCT	PRJNA13365		Wolbachia endosymbiont of Drosophila ananassae	464	1.4	Y					2007-01-17	2005-02-03
95	AAGC01	BCT	PRJNA13364		Wolbachia endosymbiont of Drosophila simulans	629	1.1	Y					2007-01-17	2005-02-03
96	AAGD02	INV	PRJNA12588		Caenorhabditis remanei	12,680	138.4		3,670	145.4	Y		2007-07-19	2007-07-17
97	AAGE02	INV	PRJNA12434		Aedes aegypti	36,206	1,310.1		4,758	1,384.0	Y		2007-06-25	2005-10-26
98	AAGF03	INV	PRJNA12564		Tetrahymena thermophila SB210	1,778	103.0		1,158	103.0	Y		2009-03-23	2008-09-12
99	AAGH01	INV	PRJNA12464		Drosophila simulans	31,198	125.7		10,823	264.3	Y		2008-07-11	2005-03-23
100	AAGI01	PLN	PRJNA13754		Phaeosphaeria nodorum SN15	496	37.1		109	37.2	Y		2007-11-23	2005-04-04