Articles 2012

CONFERENCE: 23  POSTER: 6  JOURNAL: 6  CHAPTER: 3  TECHNICAL REPORT: 1  ABSTRACT: 1

[CONFERENCE]
Bekhuis T, Demner-Fushman D, Crowley R.
Research Designs In Mesh and Emtree: a Comparative Study of Coverage.
AMIA Annual Symposium Proceedings. Chicago, IL. November 2012:1594.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Glenn Pearson, Michael Gill, Sameer Antani, Leif Neve, Gregory Miernicki, Krittach Phichaphop, Ajay Kanduru, Stefan Jaeger, and George Thoma.
The Role of Location For Family Reunification During Disasters.
HealthGIS 2012. Redondo Beach, CA. November 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Matthew S. Simpson, PhD; Daekeun You, PhD; Md Mahmudur Rahman, PhD; Sameer K. Antani, PhD; George R. Thoma, PhD; and Dina Demner-Fushman, MD, PhD.
Towards the Creation of a Visual Ontology of Biomedical Imaging Entities.
AMIA 2012 Annual Symposium Proceedings. Chicago, IL. November 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Sema Candemir, Stefan Jaeger, Kannappan Palaniappan1, Sameer Antani, and George Thoma.
Graph Cut Based Automatic Lung Boundary Detection In Chest Radiographs.
1st Annual IEEE Healthcare Innovation Conference of the IEEE EMBS. Houston, TX. November 2012:7-9.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Zhiyun Xue, Sameer Antani, Rodney Long, Dina Demner-Fushman, George Thoma.
Window Classification of Brain CT Images In Biomedical Articles.
Proceedings of AMIA Annual Meeting. November 2012:1023-1029.
Abstract | Full Text (PDF) | View Citation

[POSTER]
Callaghan FM, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald CJ.
Using NLP and Manually Validated Data From Clinical Notes To Produce Unbiased Estimates of Smoking Cancer Risk.
NIH Research Festival. October 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Callaghan FM, Jackson MT, Demner-Fushman D, Abhyankar S, McDonald CJ.
Analysis of Data That Has Been Extracted From Free-text Using Natural Language Processing: a Likelihood Model For MisclassiFication With an Application To Medical Informatics.
International Conference on Advances in Interdis- ciplinary Statistics and Combinatorics (AISC2012). Greensboro, NC. October 2012.
Abstract | View Citation

[POSTER]
Cheryl Fisher EdD, RN-BC, Charlotte Seckman PhD, RN-BC, Dina Demner-Fushman, MD, PhD.
EBP InfoBot: Evaluation of an Evidence-Based Practice System.
NIH Research Festival. October 2012.
Abstract | Full Text (PDF) | View Citation

[POSTER]
Eugene Borovikov, Szil´rd Vajda, Girish Lingappa, Sameer Antani, Michael Gill, George R. Thoma.
FaceMatch: Visual Search For Pictures of Missing Persons During a Disaster Event.
NIH Research Festival. October 2012.
Abstract | Full Text (PDF) | View Citation

[POSTER]
Jaeger S, Karargyris A, Antani S, Thoma GR.
Automatic Screening For Lung Diseases In Chest Radiographs: a Global Health Initiative.
NIH Research Festival. October 2012.
Abstract | Full Text (PDF) | View Citation

[POSTER]
S Abhyankar, D Demner-Fushman, F Callaghan, K Leishear, CJ McDonald.
MIMIC-II: a Database of 30,000+ Patients For ICU Research.
NIH Research Festival. October 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Stefan Jaeger.
An Information-Theoretic Neural Model Based On Concepts In Chinese Medicine.
Third International Workshop on Information Technology for Chinese Medicine, IEEE International Conference on Bioinformatics and Biomedicine (BIBM). October 2012:496-502.
Abstract | Full Text (PDF) | View Citation

[POSTER]
Ward SM, Bennett DA, Long LR, Thoma GR.
Usability Analysis: Six Quick and Dirty User-focused Design Methods Resulting In Better User Satisfaction and Cost Savings.
NIH Research Festival. October 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Matthew S. Simpson, Daekeun You, Md Mahmudur Rahman, Dina Demner-Fushman, Sameer Antani, and George Thoma.
ITI's Participation In the ImageCLEF 2012 Medical Retrieval and ClassiCation Tasks.
CLEF 2012 Working Notes. Rome, Italy. September 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Md Mahmudur Rahman, Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, and George R. Thoma.
An Interactive Image Retrieval Framework For Biomedical Articles Based On Visual Region-Of-Interest (ROI) Identification and Classification.
The 2nd IEEE Conference on Healthcare Informatics, Imaging, and Systems Biology Analyzing Big Data for Healthcare and Biomedical Sciences (HISB 2012). La Jolla, CA. September 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Soda, P, Antani S, Tortorella F, Pechenizkiy M, Cannataro M, Tsymbal, A.
Trends In Computer-Based Medical Systems.
ACM SIGHIT Record. September 2012;2(2):46-50.
Abstract | Full Text (PDF) | View Citation

[JOURNAL]
Abhyankar S, Demner-Fushman D, McDonald CJ.
Standardizing Clinical Laboratory Data For Secondary Use.
Journal of Biomedical Informatics. August 2012;45(4):642-650.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Stefan Jaeger, Alexandros Karargyris, Sameer Antani, and George Thoma.
Detecting Tuberculosis In Radiographs Using Combined Lung Masks.
34th Int. Conf. of the IEEE Engineering in Medicine & Biology Society (EMBC). San Diego, CA. August 2012:4978-4981.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
In Cheol Kim, Daniel X. Le, George R. Thoma.
Identifying Comment-on Citation Data In Online Biomedical Articles Using SVM-based Text Summarization Technique.
Proc. International Conf. Artificial Intelligence (ICAI 2012). Las Vegas. July 2012;1:pp. 431-437.
Abstract | Full Text (PDF) | View Citation

[JOURNAL]
Tanja Bekhuis, Dina Demner-Fushman.
Screening Nonrandomized Studies For Medical Systematic Reviews: a Comparative Study of Classifiers.
Artificial Intelligence Medicine 2012. Chicago, IL. July 2012;3:197-207.
Abstract | Full Text (PDF) | View Citation

[JOURNAL]
Demner-Fushman D, Antani S, Simpson MS, Thoma GR.
Design and Development of a Multimodal Biomedical Information Retrieval System.
Journal of Computing Science and Engineering. June 2012;6(2):168-177.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Dharitri Misra, Robert H. Hall, Susan M. Payne, George R. Thoma.
Digital Preservation and Knowledge Discovery Based On Documents From an International Health Science Program.
Proceedings of the 12th ACM/IEEE-CS Joint Conference on Digital Libraries (JCDL). Washington, DC. June 2012:23-26.
Abstract | Full Text (PDF) | View Citation

[JOURNAL]
Jimeno-Yepes A, Mork JG, Demner-Fushman D, Aronson AR.
A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based On Meta-Learning.
Journal of Computing Science and Engineering. June 2012;6(2):151-160.
Abstract | Full Text (PDF) | View Citation

[JOURNAL]
Rance B, Doughty E, Demner-Fushman D, Kann MG, Bodenreider O.
A Mutation-centric Approach To Identifying Pharmacogenomic Relations In Text.
Journal of Biomedical Informatics. June 2012;45(5):835-841.
Abstract | Full Text (PDF) | View Citation

[ABSTRACT]
Demner-Fushman D, Abhyankar S.
Syntactic-Semantic Question Frames For Cohort Identification.
The 2012 Joint Summits on Translational Science. San Francisco, CA. March 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Ghosh P, Antani SA, Long LR, Thoma GR.
Unsupervised Segmentation of Lungs From Chest Radiographs.
Proceedings of the SPIE Medical Imaging 2012. February 2012;8315:831532-831532-6.
Abstract | Full Text (PDF) | View Citation

[TECHNICAL REPORT]
Eugene Borovikov, Girish Lingappa.
Face Matching In Lost Person Finder Project.
Technical Report. January 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Jimeno-Yepes A, Mork JG, Wilkowski B, Demner-Fushman D, Aronson AR.
EDLINE MeSH Indexing: Lessons Learned From Machine Learning and Future Directions.
IHI. Miami, FL. January 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Jongwoo Kim, Daniel X. Le, George R. Thoma.
Combining SVM Classifiers To Identify Investigator Name Zones In Biomedical Articles.
San Francisco, CA. January 2012;8297.
Abstract | Full Text (PDF) | View Citation

[CHAPTER]
Stefan Jaeger.
A Geomedical Approach To Chinese Medicine: The Origin of the Yin-Yang Symbol.
Recent Advances in Theories and Practice of Chinese Medicine. January 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Apostolova E, Tomuro N, Mongkolwat P, Demner-Fushman D.
Domain Adaptation of Coreference Resolution For Radiology Reports.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing (BioNLP '12), Association for Computational Linguistics. Stroudburg, PA. 2012:118-121.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Callaghan FM, Jackson MT, Demner-Fusham D, Abhyankar S, McDonald CJ.
NLP-derived Information Improves the Estimates of Risk of Disease Compared To Estimates Based On Manually Extracted Data Alone.
5th International Symposium on Semantic Mining in Biomedicine. Zurich. 2012.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Cheng B*, Wang R*, Antani S, Stanley RJ*, Thoma GR.
Graphical Image Classification Combining an Evolutionary Algorithm and Binary Particle Swarm Optimization.
Proceedings of the SPIE, Document Recognition and Retrieval XIX. 2012;8297:829703-1-8.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Demner-Fushman D, Abhyankar S, Jimeno-Yepes A, Loane R, Mork JG, Lang FM, Ide N, Aronson AR.
NLM At TREC 2012 Medical Records Retrieval.
The Twenty First Text Retrieval Conference TREC-2012. Gaithersburg, MD. 2012.
Abstract | Full Text (PDF) | View Citation

[JOURNAL]
Demner-Fushman D, Abhyankar S.
Syntactic-Semantic Frames For Clinical Cohort Identification Queries.
Lecture Notes in Computer Science. 2012;7348:100-112.
Abstract | Full Text (PDF) | View Citation

[CHAPTER]
Eugene Borovikov, Ilya Zavorin.
A Multi-stage Document Processing Approach To Arabic Text Recognition.
Guide to OCR for Arabic Scripts. 2012:55-78.
Abstract | View Citation

[CONFERENCE]
Kim J, Le DX, Thoma GR.
Combining SVM Classifiers To Identify Investigator Name Zones In Biomedical Articles.
Proceedings of the SPIE, Document Recognition and Retrieval XIX,. 2012;8297:829704-1-8.
Abstract | Full Text (PDF) | View Citation

[CHAPTER]
Matthew S. Simpson, Dina Demner-Fushman.
Biomedical Text Mining: a Survey of Recent Progress.
Mining Text Data. Berlin/Heidelberg, Germany. 2012:465-517.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Muller H (a, b), Kalpathy-Cramer J (c), Demner-Fushman D (d), Antani S (d).
Creating a Classification of Image Types In the Medical Literature For Visual Categorization.
Proceedings of SPIE Medical Imaging: Advanced PACS-based Imaging Informatics and Therapeutic Applications. 2012;8319:83190P-1-12.
Abstract | Full Text (PDF) | View Citation

[CONFERENCE]
Muller H, Herrera AGS, Kalpathy-Cramer J, Demner-Fushman D, Antani S, Eggel I.
Overview of the ImageCLEF 2012 Medical Image Retrieval and Classification Tasks.
CLEF 2012. 2012.
Abstract | Full Text (PDF) | View Citation