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Berezhkovskii AM "Aris-Taylor dispersion from single-particle point of veiw." J. Chem. Phys. 137(6), 066101, 2 pp.   [Abstract] [Full Article]

Pineda I, Vazquez M-V, Berezhkovskii AM, Dagdug L "Diffusion in periodic two-dimensional channels formed by overlapping circles: Comparison of analytical and numerical results." J. Chem. Phys. 135(22):224101, 5 pp.   [Abstract] [Full Article]

Berezhkovakii AM, Szabo A "Time scale separation leads to position-dependent diffusion along the slow coordinate." J. Chem. Phys. 135(7):074108-1-5   [Abstract] [Full Article]

Berezhkovskii AM, Sample C, Shvartsman SY "Formation of morphogen gradients: Local accumulation time." Phys. Rev. E 83(5):051906, 7pp.   [Abstract] [Full Article]

Berezhkovskii AM, Dagdug L "Analytical treatment of biased diffusion in tubes with periodic dead ends." J. Chem. Phys. 134(12):124109, 8 pp.   [Abstract] [Full Article]

Dagdug L, Berezhkovskii AM, Makhnovskii YuA, Zitserman VYu, Bezrukov SM "Turnover behavior of effective mobility in a tube with periodic entropy potential." J. Chem. Phys. 134(10): 101102-1-3   [Abstract] [Full Article]

Berezhkovskii AM "Renewal theory for single-molecule systems with multiple reaction channels." J. Chem. Phys. 134(7), 8 pp.   [Abstract] [Full Article]

Berezhkovskii AM, Sample C, Shvartsman SY "How long does it take to establish a morphogen gradient" Biophys. J. 99(8):L59-61   [Abstract] [Full Article]

Shvartsman SY, Coppey M, Berezhkovskii AM "MAPK signaling in equations and embryos." Fly 3(1):62-67   [Abstract]  [PubMed]

Berezhkovskii AM, Coppey M, Shvartsman SY "Signaling gradients in cascades of two-state reaction-diffusion systems" Proc. Natl. Acad. Sci. USA. 106(4):1087-92   [Abstract] [Full Article]

Shvartsman SY,Mathieu Coppey M, and Berezhkovskii AM "Dynamics of maternal morphogen gradients in Drosophila" Current Opinion in Genetics and Development 18(4): 342-47 (2008)   [Abstract] [Full Article]

Coppey M, Boettiger AN, Berezhkovskii AM, Shvartsman SY "Nuclear Trapping Shapes the Terminal Gradient in the Drosophila Ebryo." Current Biology 18(12): 915-19   [Abstract] [Full Article]

Berezhkovskii AM, Weiss GH "Propagators and related descriptors for non-Markovian asymmetric random walks with and without boundaries." J. Chem. Phys. 128(1): 044914, 5 pp.   [Abstract] [Full Article]

Dagdug L, Berezhkovskii AM, Makhnovskii YuA, Zitserman VYu "Transient diffusion in a tube with dead ends." J Chem. Phys. 127(22) 224712, 9pp.   [Abstract] [Full Article]

Dudko OK, Berezhkovskii AM, Weiss GH "Time-dependent diffusion coefficients in periodic porous materials" J PHYS CHEM B 109 (45): 21296-21299

Dudko OK, Berezhkovskii AM, and Weiss GH "Diffusion in the presence of periodically spaced permeable membranes." J Chem Phys 121: 11283-11288   [PubMed]

Dagdug L, Berezhkovskii AM, Weiss GH "The kinetics of ligand equilibration between tubular and vesicular parts of the endosome." Phys Rev E. 69:012902   [PubMed]

Dudko O, Berezhkovskii AM, Weiss GH "Rate constant for diffusion-influenced ligand binding to receptors of arbitrary shape on a cell surface." J Chem Phys. 121:1562-1565   [PubMed]

Berezhkovskii AM, Batsilas L, Shvartsman SY "Ligand Trapping in Epithelial Layers and Cell Cultures." Biophys. Chem. 107(3): 221-7   [PubMed]

Berezhkovskii, A. M. and A. V. Barzykin "Diffusive Escape and Reentry through a Channel in the Cavity Wall." Chem. Phys. Lett. 383(1-2): 6-10

Grigor'ev IV, Makhnovskii YA, Berezhkovskii AM, Zitserman V "Kinetics of geminate recombination in a cavity." Russ J Phys Chem. 77:1277-1281

Grigor'ev IV, Makhnovskii YA, Berezhkovskii AM, Zitserman V "Kinetics of diffusion-controlled ligand binding to a site hidden in a cavity." Chem Phys Rep. 22:49-54

Dagdug L, Berezhkovskii AM, Weiss GH "Smoluchowski-like theory for trapping kinetics in a slab." Physica A. 318:341-346

Berezhkovskii AM, Hummer G "Unsolved problems in noise and fluctuations. In Random walk model for single-file transport of water molecules through carbon nanotubes." AIP (New York, NY) 267-272

Stojilkovic KS, Berezhkovskii AM, Zitserman VY, Bezrukov SM "Conductivity and Microviscosity of Electrolyte Solutions Containing Polyethylene Glycols." J. Chem. Phys. 119: 6973-78

Larralde H, Berezhkovskii AM, Weiss GH "Effect of the Absorbing Boundary on the Average Volume Visited by N Spherical Browian Particles." Physica A. 330:167-176

Dagdug L, Berezhkovskii AM, Shvartsman S, Weiss GH "Equilibration in two chambers connected by a capillary." Journal of Chemical Physics 119:12473-12478

Dagdug, L., A. M. Berezhkovskii, et al. "Diffusion-controlled reactions with a trapping site hidden in a channel." Journal of Chemical Physics 118: 2367-73

Berezhkovskii, A. M. and I. V. Gopich "Translocation of rod-like polymers through membrane channels." Biophysical Journal 84: 787-793   [PubMed]

Berezhkovskii, A. M. and A. V. Barzykin "Escape and Reentry of a Brownian Particle through a Hole in a Cavity." J. Chem. Phys. 118: 6700-01

Berezhkovskii, A. M., V. Y. Zitserman, et al. "Effective Diffusivity in Periodic Porous Materials." J. Chem. Phys. 119: 6991-93

Berezhkovskii AM, Zitserman VY, Shvartsman SY "Diffusivity in Periodic Arrays of Spherical Cavities." J. Chem. Phys. 118: 7146-47

Berezhkovskii, A. M. and V. Y. Zitserman "Diffusion in Potential Field in the Presence of Gaussian Sink. Analytical Solution of the Problem." Russ. J. Electrochemistry 39: 53-60

Berezhkovskii AM, Pustovoit MA, Bezrukov SM "Channel-Facilitated Membrane Transport: Average Lifetimes in the Channel." J. Chem. Phys 119: 3943-51

Batsilas L, Berezhkovskii AM, Shvartsman SY "Stochastic Model of Autocrine and Paracrine Signals in Cell Culture Assays." Biophys J. 85(6):3659-65   [PubMed]

Makhnovskii, Y. A., Grigor'ev, I. V., Berezhkovskii, A. M. "Kinetics of Annihilation of Brownian Particles on Traps with Distributed Radii." JETPh 94: 403-10

Gopich, I. V., A. M. Berezhkovskii, et al. "Concentration Dependence of the Diffusion Controlled Steady-State Rate Constant." J. Chem. Phys 117: 2987-88

Dagdug, L., A. M. Berezhkovskii, et al. "Smoluchowski-like theory for trapping kinetics in a slab." Physica A.

Dagdug L, Berezhkovskii AM, Weiss GH "The Number of Distinct Sites Visited by a Random Walker Trapped by an Absorbing Boundary." Physical Review E. 66(012901): 1-4   [PubMed]

Berezhkovskii, A. M. and G. Sutman "Time and Length Scales for Diffusion in Liquids." Phys. Rev. E 65: 060201   [PubMed]

Berezhkovskii, A. M. and G. Hummer "Single-File Transport of Water Molecules Through a Carbon Nanotube." Phys. Rev. Lett 9: 064503-1-1-064503-4   [PubMed]

Berezhkovskii, A. M., M. A. Pustovoit, et al. "Effect of Binding on Particle Number Fluctuations in a Membrane Channel." J. Chem. Phys. 116: 6216-20

Berezhkovskii, A. M. and G. H. Weiss "Detailed description of a two-state non-Markov system." Physica A 303: 1-12

Berezhkovskii, A. M., M. Pustovoit, et al. "Channel Facilitated Membrane Transport: Transit Probability and Interaction with the Channel." J. Chem. Phys 116: 9952-56

Makhnovskii, Y. A. and A. M. Berezhkovskii "Effect of a group of Traps on Fluctuation Assisted Inhibition of Browian Particle Decay." Chem. Phys. Rep. 19: 853-59

Bogu¿a, M., A. M. Berezhkovskii, et al. "Single-Molecule Fluorescence Spectroscopy: Rate Constants for Slow Conformational Transitions and their Sampling Errors." Journal of Physical Chemistry A 105: 4898-4901

Berezhkovskii, A. M., Y. A. Makhnovskii, et al. "Trapping of Brownian particles by random spheres of different radii." Journal of Chemical Physics 115: 5376-80

Berezhkovskii, A. M., H. Larralde, et al. "Region visited by a pherical Brownian particle in the presence of an abosrbing boundary." Physical Review E 64: 062104-1 - 062104-3

Berezhkovskii, A. M., M. Bogu¿a, et al. "Evaluation of Rate Constants for Conformational Transitions using Single-Molecule Fluroescence Spectroscopy." Chemical Physics Letter 336: 321-324

Boguna, M., Kullman, L., Bezrukov, S. M., Berezhkovskii, A. M., Weiss, G. H."Rate Constants from Uncorrelated Single-Molecule Data." J. Phys. Chem.B 105: 6246-6250

Bogachev, L. V., Molchanov, S. A., Makhnovskii, Y. A., Berezhkovskii, A. M. "Correlation Effects in the Trapping Problem: General Approach and Rigorous Results." Canadian Mathematical Society Conference Proceedings 2000 29: 29-42

Makhnovskii, Y. A., A. M. Berezhkovskii, et al. "Trapping by Clusters of traps." Phys. Rev. E 61: 6302-07   [PubMed]

Bezrukov, S. M., A. M. Berezhkovskii, et al. "Particle Number Fluctuations in a Membrane Channel." J. Chem. Phys. 113(8206-11)

Berezhkovskii, A.M., A. Szabo and G.H. Weiss "Theory of Fluorescence of Single Molecules Undergoing Multistate Conformational Dyanmics." J. Phys. Chem. B104(16): 3776-80   [Abstract]

Weiss, G.H., M. Boguna and A.M. Berezhkovskii "Occupancy of a Single Site by Many Random Walkers."ý Physical Review E ý62(3): 3250-3256   [Abstract]  [PubMed]

Boguna, M., A.M. Berezhkovskii and G.H. Weiss"Residence time densities for non-Markovian systems 1. The two-state system." Physica A 282: 475-485   [Abstract]

Makhnovskii, Y. A., A. M. Berezhkovskii, et al. "Role of Trap Clustering in the Trapping Kinetics." J. Chem. Phys 111: 711-20

Bicout, D. J., A. M. Berezhkovskii, et al. "First Passage Times in Phase Space for the Strong Collision Model." Physical Review E 59: 3702-3705

Berezhkovskii, A. M., A. Szabo, et al. "Reaction dynamics on a thermally fluctuating potential." J. Chem. Phys 111: 9952-9957

Berezhkovskii, A. M., S. M. Bezrukov, et al. "The influence of polymer on the diffusion of a spherical tracer." J. Chem. Phys. 111: 5641-5644

Berezhkovskii, A. M., D. J. Bicout, G. H. Weiss "Collision Model for Activated Rate Processes: Turnover Behavior of the Rate Constant." J. Chem. Phys 111: 11050-11059   [Abstract]

Berezhkovskii, A.M., A. Szabo and G.H. Weiss "Theory of single-molecule flourescence spectroscopy of two-state systems." Chemical Physics 110(18): 9145-9150   [Abstract]

Berezhkovskii, A.M., D.J. Bicout and G.H. Weiss "Target and Trapping Problems: From the Ballistic to the Diffusive Regime." Chemical Physics 110(2): 1112-1122   [Abstract]

Bicout, D. J., A. M. Berezhkovskii, et al. "Where do Brownian particles spend their time?" Physica A 258: 352-364

Bicout, D. J., A. M. Berezhkovskii, et al. "Turnover in the mean survival time for a particle moving between two traps." Physica A 256: 342-350

Berezhkovskii AM, Weiss GH "Average volume of the domain visited by randomly injected spherical particles in d dimensions."¿Phys Rev E¿54:92-9   [PubMed]