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Cn3D macromolecular structure viewer
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Welcome to the Cn3D Tutorial!
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Introduction
What does Cn3D do?
Downloading and installing Cn3D
Document conventions
Literature references
Retrieving individual structures (MMDB)
From an Entrez literature search
From an Entrez sequence neighbor
From a BLAST search
From a known PDB identifier
Viewing individual structures in Cn3D
Basics of Cn3D controls
The structure window main menu
The style panel
Cn3D's sequence viewer
Retrieving structure alignments (VAST)
Viewing structure alignments in Cn3D
Cn3D's alignment viewer
Cn3D's alignment model
Imports and conservation
Importing sequences and structures
Visualizing sequence conservation
Annotating a structure
Backbone and termini labels
User-defined styles
Saving structures and images
Using Cn3D for interactive figures
Advanced topics
Animation controls
Visualizing crystallographic disorder
Pattern searching
Importing user PDB files
Stereo views
Alignment editing
Using the editor
Correcting alignment errors
Merging sequences into a multiple alignment
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| Revised 04 August 2011 |
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