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Bailey MJ, Coon SL, Carter DA, Humphries A, Kim JS, Shi Q, Gaildrat P, Morin F, Ganguly S, Hogenesch JB, Weller JL, Rath MF, Mller M, Baler R, Sugden D, Rangel ZG, Munson PJ, Klein DC. Night/Day Changes in Pineal Expression of >600 Genes: CENTRAL ROLE OF ADRENERGIC/cAMP SIGNALING." J Biol Chem. 2009 Mar 20;284(12):7606-22. Epub 2008 Dec 22.   [Abstract]  [PubMed]

Nishizuka1,S., Washburn,N.R., and Munson, P.J. "Evaluation method of ordinary flatbed scanners for quantitative density analysis" BioTechniques. 40:442-448 (2006)   [Abstract] [Full Article]

Wang,S., Zhang, J., Theel,S., Barb, J.J, Munson, P.J. and Danner,R.L. "Nitric oxide activation of Erk1/2 regulates thestability and translation of mRNA transcriptscontaining CU-rich elements" Nucleic Acids Research, Vol. 34, No. 10 30443056 (2006)   [Abstract] [Full Article]

Talwar,S.,Munson,P.J., Barb,J.,Fiuza, C., Cintron,A.P., Logun,C., Tropea,M., Khan,S., Reda,D., Shelhamer,J.H., Danner,R.L. and Suffredini,A.F. "Gene expression profiles of peripheral blood leukocytes after endotoxin challenge in humans" Physiol Genomics 25:203-215, (2006)   [Abstract] [Full Article]

Sam,V., Tai,C.H., Garnier1,J., Gibrat,J.F., Lee,B. and Munson, P.J. "ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification" BMC Bioinformatics. 7:206 (2006)   [Abstract] [Full Article]

HUYNH,T.T., PACAK,K., WONG,D.L., LINEHAN,W.M., GOLDSTEIN,D.S., ELKAHLOUN,A.G., MUNSON,P.J. and Eisenhofer,G."Transcriptional Regulation ofPhenylethanolamineN-Methyltransferase in Pheochromocytomas from Patients with von HippelLindau Syndrome and Multiple Endocrine Neoplasia Type 2" Ann. N.Y. Acad. Sci. 1073: 241252 (2006)   [Abstract] [Full Article]

Hoover,S.E., Cohrs,R.J., Rangel,Z.G., Gilden,D.H., Munson, P. and Cohen, J.I. "Downregulation of Varicella-Zoster Virus (VZV) Immediate-EarlyORF62 Transcription by VZV ORF63 Correlates withVirus Replication In Vitro and with Latency" JOURNAL OF VIROLOGY. 80.7.34593468 (2006)   [Abstract] [Full Article]

Torre,C., Ying,S., Munson, P.J.,Meduri,G.U., and Suffredini, A.F."Proteomic analysis of inflammatory biomarkers inbronchoalveolar lavage" Proteomics 6: 39493957 (2006)   [Abstract] [Full Article]

Cassiani-Ingoni,R.,Cabral, E.S.,Lunemann,J.D,Garza,Z.,Magnus,T.,Gelderblom,H.,Munson,P.J.,Marques,M. and Roland Martin, "Borrelia burgdorferi Induces TLR1 and TLR2 in Human Microgliaand Peripheral Blood Monocytes but Differentially RegulatesHLA-Class II Expression" J Neuropathol Exp Neurol Volume 65, Number 6, (2006)   [Abstract] [Full Article]

Cabral,E.S.,Gelderblom,H.,Hornung,R.L.,Munson,P.J.,Martin,R.and Marques,A.R "Borrelia burgdorferi LipoproteinMediated TLR2Stimulation Causes the Down-Regulation of TLR5in Human Monocytes" The Journal of Infectious Diseases: 193:84959 (2006)   [Abstract] [Full Article]

BROUWERS,F.M.,ELKAHLOUN,A.G.,Munson,P.J.,EISENHOFER, G.,BARB,J.LINEHAN,W.M.,LENDERS,J.W.M,KRIJGER,R.D., MANNELLI,M.,UDELSMAN,R., OCAL,I.T.,SHULKIN,B.L.,BORNSTEIN,S.R.,BREZA,J., KSINANTOVA,L.AND PACAK,K. "Gene Expression Profiling of Benignand Malignant Pheochromocytoma" Ann. N.Y. Acad. Sci. 1073: 541556 (2006)   [Abstract] [Full Article]

Kovanen, P.E.,Young, L., Al-Shami1, A., Rovella,V., Pise-Masison,C.A, Radonovich, M.F., Powell, J., Fu, J., Brady, J.N., Munson, P.J., and Leonard,W.J. "Global analysis of IL-2 target genes: identificationof chromosomal clusters of expressed genes" International Immunology, Vol. 17, No. 8, pp. 10091021    [Abstract] [Full Article]

Cui,X., Zhang,J., Ma,P.,Myers, D.E, Goldberg,I.G., Sittler, K.J.,Barb,J.J., Munson,P.J.,Cintron,A.P.,McCoy,J.P.,Wang, S. and Danner, R.L. "cGMP-independent nitric oxide signaling and regulation of the cell cycle" BMC Genomics.6:151 doi:10.1186/1471-2164-6-151 (2005)   [Abstract] [Full Article]

Wu S, Baxendale V, Chen Y, Pang AL, Stitely T, Munson PJ, Leung M, Ravindranath N, Dym M, Rennert O, Chan W "Analysis of Mouse Germ Cell Transcriptome at Different Stages of Spermatogenesis by SAGE: Biological Significance." Genomics 84(6):971-81   [PubMed]

Pawliczak R, Woszczek G, Logun C, Barb J, Suffredini AF, Munson PJ, Danner RL, Shelhamer JH "The influence of interferon gamma on gene expression in human normal bronchial epithelial cells." Am J Respir Crit Care Med. 2004:A675

Jison ML, Munson PJ, Barb JJ, Suffredini AF, Talwar S, Logun C, Raghavachari N, Beigel JH, Shelhamer JH, Danner RL, Gladwin MT "Blood mononuclear cell gene expression profiles characterize the oxidant, hemolytic, and inflammatory stress of sickle cell disease." Blood 104(1):270-80   [PubMed]

Gius D, Cui H, Bradbury M, Cook J, Smart DK, Zhao S, Young L, Brandenburg SA, Hu Y, Bisht KS, Ho aS, Mattson D, Sun L, Munson PJ, Chuang EY, Mitchel JB, Feinberg AP "Distinct Effects on Gene Expression of Chemical and Genetic Manipulation of the Cancer Epigenome Revealed by a Multimodality Approach." Cancer Cell. 6(4):361-71   [PubMed]

Eisenhofer G, Huynh T, Pacak K, Brouwers FM, Walther M, Linehan WM, Munson PJ, Mannelli M, Goldstein DS, Elkahloun AG "Distinct gene expression profiles in norepinephrine and epinephrine producing hereditary and sporadic pheochromocytomas: Activation of hypoxia-driven angiogenic pathways in von Hippel-Lindau syndrome." Endocrine-Related Cancer 11(4):897-911   [PubMed]

Boissinot S, Entezam A, Young L, Munson PJ, Furano AV "The insertional history of an active family of L1 retrotransposons in humans." Genome Res. 14(7):1221-31   [PubMed]

Parada LA, McQueen P, Munson P, Misteli T "Cell type specific spatial organization of genomes," Fourth European Cytogenetics Conference published in Annales de Genetique, 46:208

Talwar S, Munson PJ, Fiuza C, Barb J, Danner RL, Suffredini A "Gene expression profiling of lung lavage and peripheral blood cells in humans after local pulmonary endotoxin challenge." Am J Respir Crit Care Med. 167:A428

Nishizuka S, Chen ST, Gwadry FG, Alexander J, Major SM, Scherf U, Reinhold WC, Waltham M, Charboneau L, Young L, Bussey KJ, Kim S, Lababidi S, Lee JK, Pittaluga S, Scudiero DA, Sausville EA, Munson PJ, Petricoin EF 3rd, Liotta LA, Hewitt SM, Raffeld M, Weinstein JN "Diagnostic markers that distinguish colon and ovarian adenocarcinomas: identification by genomic, proteomic, and tissue array profiling." Cancer Res. 63(17):5243-50.   [PubMed]

Daoud SS, Munson PJ, Reinhold W, Young L, Prabhu VV, Yu Q, LaRose J, Kohn KW, Weinstein JN, Pommier Y "Impact of p53 knockout and topotecan treatment on gene expression profiles in human colon carcinoma cells: a pharmacogenomic study." Cancer Res. 63(11):2782-93   [PubMed]

Nishizuka, S., Charboneau, L., Young, L., Kauor, S., Reinhold, W. C., Waltham, M., Kouros-Mehr, H., Bussey, K. J., Lee, J. K., Espina, V., Munson, P. J., "Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays." PNAS 100(24): 14229-14234

Liotta, L. A., Espina, V., Mehta, A. I., Calvert, V., Rosenblatt, K., Geho, D., Munson, P. J., Young, L., Wulfkuhle, J., Petricoin, E. F., "Protein microarrays: Meeting Analytical challenges for clinical applications." Cancer Cell 3: 317-324   [PubMed]

Roix JJ, McQueen PG, Munson PJ, Parada LA, Misteli T "Spatial proximity of translocation-prone gene loci in human lymphomas." Nature Genetics 34(3):287-91   [PubMed]

Hecht D, Jung D, Prabhu VV, Munson PJ, Hoffman MP, Kleinman HK "Metallothionein Promotes Laminin-1-induced Acinar Differentiation in Vitro and Reduces Tumor Growth in Vivo." Cancer Research 65: 5370-5374   [PubMed]

Grove, A. D., Prabhu, V., Young, B. L., Lee, F. C., Kulpa, V., Munson, P. J., Kohn, E. C. "Both Protein Activation and Gene Expression Are Involved in Early Vascular Tub Formation in Vitro." Clinical Cancer Research 2002 8: 3019-3026   [PubMed]

Parada LA, McQueen PG, Munson PJ, Misteli T "Conservation of Relative Chromosome Positioning in Normal and Cancer Cells." Current Biology 12: 1692-1697   [PubMed]

Liu, K., Li, Y., Prabhu, V. V., Young, B. L., Becker, K. G., Munson, P. J., Weng, N. "Augmentation in Expression of Activation-Induced Genes Differentiates Memory from Naive CD4+ T Cells and Is a Molecular Mechanism for Enhanced Cellular Response of Memory CD4+ T Cells." The American Association of Immunologists 7335-7344   [PubMed]

Knezevic, V., Leethanakul, C., Bichesel, V., Worth, J. M., Prabhu, V., Gutkind, J., Liotta, L. A., Munson, P. "Proteomic profiling of the cancer microenvironment by antibody arrays." Proteomics 1: 1271-1278   [PubMed]

Nees, M., Geoghegan, J. M., Munson, P., Prabhu, V., Liu, Y., Androphy, E., Woodworth, C. D. "Human papillomavirus type 16 E6 and E7 proteins inhibit differentiation-dependent expression of transforming growth factor-beta2 in cervical keratinocytes." Cancer Res 60: 4289-98   [PubMed]

Grove, A.D., Lee, F.C., Prabhu, V.V., Young, B.L., Munson, P.J., Kohn, E.C. "In Validation and application of nylon cDNA microarrays in the analysis of endothelial cell gene expression during tubulogenesis (abstract)" AACR

Wong, M.-L., M.A. Kling, P.J. Munson, S. Listak, et al. "Pronounced and Sustained Central Hypernoradrenergic Function in Major Depression with Melancholic features: Relation to Hypercortisolism and Corticotropin-releasing Harmone." PNAS 97(1): 325-330   [full article pdf]

Grouse, L.H., P.J. Munson and P.S. Nelson "Sequence Database and Microarrays as Tools for Identifying Prostate Cancer Biomarkers."     [Abstract]  [PubMed]

Emmert-Buck, M.R., R.L. Strausberg, D.B. Krizman, M.F. Bonaldo, ..., P.J. Munson, et al. "Molecular Profiling of Clinical Tissue Specimens Feasibility and Applications." American Journal of Pathology 156(4): 1109-1115    [PubMed]

Carlisle AJ, Prabhu VV, Elkahloun A, Hudson J, Trent JM, Linehan WM, Williams ED, Emmert-Buck MR, Liotta LA, Munson PJ, Krizman DB "Development of a Prostate cDNA Microarray and Statistical Gene Expression Analysis Package." Molecular Carcinogenesis 28(1):12-22   [Abstract]  [PubMed]

Hecht, D., Jung, D., Munson, P. J., Prabhu, V. V., Kleinman, H. K. "In Laminin-1 Dependent Gene Expression During Acinar Differentiation of Human Salivary Gland Cells: Analysis Using cDNA Arrays" Pan-pacific connective tissue societies, 4th symposium Queenstown, New Zealand, November 15-19

Whitney LW, Becker KG, Tresser NJ, Caballero-Ramos CI, Munson PJ, et al. "Analysis of gene expression in multiple sclerosis lesions using cDNA microarrays." Annals of Neurology 46(3): 425   [Abstract]  [PubMed]

Holbrook, P.G., V. Geetha, M.A. Beaven and P.J. Munson "Recognizing the Pleckstrin homology doman fold in mammalian phospholipase D using Markov models." FEBS Letters 448: 269-272   [Abstract] [full article pdf]

Geetha, V., V.D. Francesco, J. Garnier and P.J. Munson "Comparing protein sequence-based and predicted secondary structure-based methods for identification of remote homologs." Protein Engineering 12(7): 101-108    [PubMed]

DiFrancesco, V., P.J. Munson and J. Garnier "Foresst: fold recognition from secondary structure predictions of proteins." Bioinformatics 15(2): 131-140    [PubMed]

Hecht, D., Jung, D., Munson, P. J., Prabhu, V. V., Kleinman, H. K. "In Initial array analysis of gene expression during laminin dependent acinar differentiation of a human submandibular gland cell line (Abstract)" Toward a molecular understanding of craniofacial morphogenesis, NIH, Bethesda, MD, November 22-24

Geetha, V., Di Francesco, V., Garnier, J., Munson, P. J. "In Comparison of methods for identification of remote homologs in proteins ( Abstract and Poster)" Intelligent Systems in Molecular Biology 98 Montreal, Canada, June 28-July 02

Geetha, V., Di Francesco, V., Garnier, J., Munson, P. J. "In Assessment of methods for fold assignment in proteins (abstract)" The Protein Society San Diego, CA, 1998, 159-T.

Munson, P. J. and R. K. Singh "Multi-body Interactions within the Graph of Protein Structure" ISMB 5: 198-201   [PubMed]

Magiakou, M. A., Mastorakos, G., Rabin, D., Margioris, A. N., Dubbert, B., Calogero, A. E., Tsigos, C., Munson, P. J., Chrousos, G. P. "The Maternal Hypothalamic-Pituitary-Adrenal Axis in Third Trimester Human Pregnancy." Clin. Endocrinol. 44: 419-428   [PubMed]

Vasudevan, G. and P. J. Munson "Simplified Representation of Proteins." J. Biomol. Struct. and Dynamics 13(5): 781-793

Rovati GE, Shrager RI, Nicosia S, Munson PJ "KINFIT II: A nonlinear least squares program for analysis of kinetic binding data." Molecular Pharmacology 50:86-95   [PubMed]

Yap TK, Munson PJ, Frieder O, Martino RL. "Parallel multiple sequence alignment using speculative computation." Proceedings of the International Conference on Parallel Processing E: Gallivan KA, Oconomowoc WS. ERC Press

Berger, M.P. and Munson, P.J. "A novel randomized iterative strategy for aligning multiple protein sequences" CABIOS Vol. 7 no. 4 478-484 (1991)   [Abstract] [Full Article]